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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER95473 Sorghum cytosol 87.13 88.18
Zm00001d027728_P001 Maize extracellular, plasma membrane 86.53 86.71
HORVU4Hr1G072920.1 Barley cytosol, plasma membrane 84.16 83.99
TraesCS4B01G274200.1 Wheat cytosol 83.76 83.6
TraesCS4A01G031800.1 Wheat cytosol 83.76 83.27
TraesCS4D01G272900.1 Wheat cytosol 83.56 83.07
TraesCS5D01G532700.1 Wheat cytosol 75.84 80.29
TraesCSU01G076700.1 Wheat cytosol 75.64 80.08
TraesCS5B01G534600.1 Wheat cytosol 76.44 80.08
TraesCS4A01G340500.1 Wheat cytosol 75.64 79.92
GSMUA_Achr10P... Banana nucleus 66.73 69.92
VIT_00s2262g00010.t01 Wine grape cytosol 32.08 66.39
GSMUA_Achr6P14220_001 Banana cytosol 67.52 65.2
KRG99590 Soybean endoplasmic reticulum, nucleus 57.62 59.63
Solyc04g082790.2.1 Tomato plastid 58.42 59.12
Solyc10g085790.1.1 Tomato nucleus 58.22 57.87
CDY13319 Canola cytosol 56.04 57.76
PGSC0003DMT400022137 Potato nucleus 58.61 57.59
CDX67556 Canola cytosol 53.66 57.42
CDX95397 Canola cytosol 55.84 57.09
Bra040687.1-P Field mustard cytosol 56.04 57.06
Bra028547.1-P Field mustard cytosol 55.45 57.03
CDX76225 Canola cytosol 55.84 56.85
KRG93607 Soybean nucleus 55.64 56.77
AT3G53110.1 Thale cress cytosol 55.64 56.65
VIT_08s0007g04400.t01 Wine grape cytosol 55.64 54.78
VIT_08s0007g04430.t01 Wine grape cytosol 32.48 52.73
Os01t0639100-01 Rice nucleus 27.52 34.41
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 27.33 34.16
Os06t0701100-02 Rice extracellular, nucleus, plastid 26.93 32.85
Os02t0146600-01 Rice plastid 26.53 32.37
Os01t0549700-01 Rice cytosol, plastid 23.96 28.01
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 23.76 27.78
Os04t0533000-02 Rice cytosol 24.55 24.9
Os10t0503700-01 Rice plasma membrane 25.35 24.57
Os02t0641800-02 Rice plasma membrane, plastid 24.36 24.21
Os03t0219700-01 Rice plastid 20.4 17.98
Os02t0636300-01 Rice nucleus 20.2 17.8
Os01t0970600-01 Rice plastid 16.63 17.72
Os02t0221300-01 Rice cytosol 21.78 12.49
Protein Annotations
MapMan:16.11.3.1Gene3D:3.40.50.300EntrezGene:4331680ProteinID:AAN06835.1ProteinID:ABF94071.1ProteinID:BAF10934.2
ProteinID:BAS82383.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005635GO:GO:0005730GO:GO:0005737
GO:GO:0005886GO:GO:0006139GO:GO:0006810GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0008186GO:GO:0009408GO:GO:0009409GO:GO:0009628GO:GO:0009719GO:GO:0009737
GO:GO:0009987GO:GO:0010501GO:GO:0016020GO:GO:0016787GO:GO:0016973GO:GO:0051028
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlantsGene:Os03g0158200
EnsemblPlants:Os03t0158200-01InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192PFscan:PS51194
PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF331UniProt:Q10RI7InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SMART:SM00490SUPFAM:SSF52540UniParc:UPI0000DB4870RefSeq:XP_015631989.1SEG:seg:
Description
RNA helicase 38DEAD-like helicase, N-terminal domain containing protein. (Os03t0158200-01)
Coordinates
chr3:+:3115986..3120267
Molecular Weight (calculated)
55857.7 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.384
Length
505 amino acids
Sequence
(BLAST)
001: MADGGKPPTP EKKSWADVEE EEEAKAKAAA AAEAASSSSS NEPAVDAQAK QIEALSLSVP EEHGGSGGGG DDQGPPLLDD SDESQIQAVT SGGTVYESAA
101: AFEDLKLTPE LLKGLHDEMG FSRPSKIQAV TLPMILTPPY KDLIAQAHNG SGKTTCFVLG MLSRVDPNRK VTQAICICPT RELAQQNKSV LMRMGKFTGI
201: TCACAIPPAQ KDYVPIAKMP KITDQVVIGT SGTLMKWINH KKILTNDIKI LVFDEADHML AEDGFRSDSE RIMRDIQRSA GGCQVLLFSA TFNERVKDFV
301: TRVIKDGNQI FVKKEELTLE KVKQYKVQVP DERAKIAVIK DKIFEFGQKV GQVIIFVRTK QSTKDVHNAL TLEDYVCSSI QGSLDQSERE KIIQEFKNGY
401: TKVLISTDVL ARGFDQAQVN LVINYDMPIK FGTRDEPDYE VYLHRIGRAG RFGRKGAVFN LLCGETDNTV MRKIETYFQH NVPEVRNWQS EEDFERALKD
501: AGLVE
Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)
001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
Arabidopsis Description
RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.