Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G076700.1 | Wheat | cytosol | 98.74 | 98.74 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 97.69 | 97.49 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 95.81 | 94.81 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 84.7 | 79.53 |
| EER95473 | Sorghum | cytosol | 82.18 | 78.56 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 82.18 | 77.78 |
| Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 80.29 | 75.84 |
| GSMUA_Achr10P... | Banana | nucleus | 66.25 | 65.56 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 32.29 | 63.11 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 66.04 | 60.23 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 58.91 | 57.58 |
| Solyc04g082790.2.1 | Tomato | plastid | 59.96 | 57.31 |
| Solyc10g085790.1.1 | Tomato | nucleus | 59.96 | 56.3 |
| PGSC0003DMT400022137 | Potato | nucleus | 60.17 | 55.84 |
| KRG93607 | Soybean | nucleus | 57.86 | 55.76 |
| CDX67556 | Canola | cytosol | 54.3 | 54.87 |
| CDX95397 | Canola | cytosol | 56.18 | 54.25 |
| CDX76225 | Canola | cytosol | 56.39 | 54.23 |
| Bra040687.1-P | Field mustard | cytosol | 56.39 | 54.23 |
| CDY13319 | Canola | cytosol | 55.56 | 54.08 |
| Bra028547.1-P | Field mustard | cytosol | 55.56 | 53.97 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 57.65 | 53.61 |
| AT3G53110.1 | Thale cress | cytosol | 55.14 | 53.02 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 32.91 | 50.48 |
| TraesCS7D01G412200.1 | Wheat | golgi, nucleus | 27.04 | 31.16 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 25.16 | 30.93 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 26.21 | 30.86 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 26.42 | 30.51 |
| TraesCS6D01G105000.1 | Wheat | endoplasmic reticulum, vacuole | 27.25 | 29.41 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 24.11 | 27.19 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 24.32 | 27.1 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 26.0 | 23.57 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 24.95 | 23.43 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 24.95 | 22.75 |
| TraesCS3D01G530600.1 | Wheat | plastid | 18.66 | 19.82 |
| TraesCS6D01G216300.1 | Wheat | mitochondrion | 17.61 | 15.61 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 22.01 | 7.81 |
Protein Annotations
| MapMan:16.11.3.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF331 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5D01G532700 | EnsemblPlants:TraesCS5D01G532700.1 | TIGR:cd00079 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:547607270..547610710
Molecular Weight (calculated)
53411.2 Da
IEP (calculated)
5.109
GRAVY (calculated)
-0.314
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEKKSPA DVDDPKAIET AVDENQKKME ALSLLAPEDG GGGDGPPLLD DYDDDSQIQA VASGGTVYES ATTFEDLKLT PELLKGLHDE MGFSRPRKIQ
101: AVTLPMILTP PYKNLVAQAH NGSGKTTCFV LGMLSRVDPS RRIPQAICIC PTRELAQQNK SVLMRMSKFT GITCASAISP ALKDYMPISK MAPVTDQVVI
201: GTSGTLIKWI TNKKLATRDI KILVFDEADH MLAEENFMSD STRIMRDIQS SAGDCQLLLF SATFNEKVKD FITKVIKEGN QIFVKKEDLT LDKVKQYKVR
301: VPDEIAKIEV IRDKIFEFGQ KVGQVIIFVR TKISTKNLHN ALTKEDYVCS SIQGSLDHAE REKVIQEFKD GYTKVLISTD LLARGFDQSQ VNLVINYDMP
401: IKYNSRDEPD YEVYLHRIGR AGRFGQKGAV FNLLCGETDD ILMTKIENYF QHKVQEVPSW ESEENFETVL KDAGLLE
101: AVTLPMILTP PYKNLVAQAH NGSGKTTCFV LGMLSRVDPS RRIPQAICIC PTRELAQQNK SVLMRMSKFT GITCASAISP ALKDYMPISK MAPVTDQVVI
201: GTSGTLIKWI TNKKLATRDI KILVFDEADH MLAEENFMSD STRIMRDIQS SAGDCQLLLF SATFNEKVKD FITKVIKEGN QIFVKKEDLT LDKVKQYKVR
301: VPDEIAKIEV IRDKIFEFGQ KVGQVIIFVR TKISTKNLHN ALTKEDYVCS SIQGSLDHAE REKVIQEFKD GYTKVLISTD LLARGFDQSQ VNLVINYDMP
401: IKYNSRDEPD YEVYLHRIGR AGRFGQKGAV FNLLCGETDD ILMTKIENYF QHKVQEVPSW ESEENFETVL KDAGLLE
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Arabidopsis Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.