Factsheet for PGSC0003DMT400022137

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085790.1.1	Tomato	nucleus	97.47	98.62
Solyc04g082790.2.1	Tomato	plastid	95.33	98.2
VIT_00s2262g00010.t01	Wine grape	cytosol	37.35	78.69
GSMUA_Achr10P...	Banana	nucleus	63.03	67.22
VIT_08s0007g04400.t01	Wine grape	cytosol	66.73	66.86
KRG99590	Soybean	endoplasmic reticulum, nucleus	60.7	63.93
CDX67556	Canola	cytosol	58.56	63.77
KRG93607	Soybean	nucleus	61.09	63.43
CDY13319	Canola	cytosol	60.31	63.27
Bra028547.1-P	Field mustard	cytosol	59.92	62.73
GSMUA_Achr6P14220_001	Banana	cytosol	63.81	62.72
CDX95397	Canola	cytosol	59.73	62.15
VIT_08s0007g04430.t01	Wine grape	cytosol	37.55	62.06
CDX76225	Canola	cytosol	59.53	61.69
Bra040687.1-P	Field mustard	cytosol	59.53	61.69
AT3G53110.1	Thale cress	cytosol	59.34	61.49
TraesCS5D01G532700.1	Wheat	cytosol	55.84	60.17
TraesCS4A01G340500.1	Wheat	cytosol	55.84	60.04
TraesCSU01G076700.1	Wheat	cytosol	55.64	59.96
EER95473	Sorghum	cytosol	58.17	59.92
TraesCS5B01G534600.1	Wheat	cytosol	56.03	59.75
TraesCS4B01G274200.1	Wheat	cytosol	58.17	59.09
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	58.17	59.09
Zm00001d027728_P001	Maize	extracellular, plasma membrane	57.59	58.73
TraesCS4D01G272900.1	Wheat	cytosol	57.98	58.66
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	57.59	58.61
TraesCS4A01G031800.1	Wheat	cytosol	57.78	58.46
PGSC0003DMT400088289	Potato	cytosol	27.63	34.3
PGSC0003DMT400075339	Potato	cytosol	27.24	33.9
PGSC0003DMT400021166	Potato	cytosol	27.04	33.66
PGSC0003DMT400075336	Potato	cytosol	26.65	33.41
PGSC0003DMT400012518	Potato	cytosol	26.85	33.41
PGSC0003DMT400019783	Potato	cytosol	26.26	33.01
PGSC0003DMT400052757	Potato	cytosol	24.32	29.21
PGSC0003DMT400053566	Potato	cytosol	23.93	28.81
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	21.21	19.89
PGSC0003DMT400023224	Potato	nucleus	10.51	16.82

Protein Annotations

EntrezGene:102600806	MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008186	GO:GO:0009408	GO:GO:0009409
GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0016020	GO:GO:0016787	GO:GO:0016973
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1AG92
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400008589	PGSC:PGSC0003DMG400008589	EnsemblPlants:PGSC0003DMT400022137
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295C495	RefSeq:XP_006367250.1	SEG:seg

Description

RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400008589]

Coordinates

chr10:-:52663588..52669043

Molecular Weight (calculated)

56917.9 Da

IEP (calculated)

4.836

GRAVY (calculated)

-0.285

Length

514 amino acids

Sequence
(BLAST)

001: MADTSSTSTA TSSTAASTTA NPPESKSWAD QADEIDQAEQ SADQADEIDQ AEQSSASNEE GATAEINIGS LQVDESKRDN STLSEPEDSS IQAVTSGDTM
101: YKSAKRFEDL NLSPELLKGL YVQMQFERPS KIQEISLPMI LTPPYKNLIA QAHNGSGKTT CFVLGMLSRI DPKLAAPQAL CICPTRELAI QNMEVLLKMG
201: KFTGITSELG IPADSANYIP ISKRPPVTAQ VVIGTPGTIN KWVTARKLGM SCMKILVFDE ADHMLAESGF QDDSIRIMKA IVKASVNCQV LLFSATFGEN
301: VKAFVTKIVQ DLFVQDYNQM FVKKEELSLD SVKQYKVQCP DELSKIMVIK DRILELGQKV GQTIIFVRTR NSASMLHKSL VDYGYEVTTI QGALRQEDRD
401: KIIKEFKDGL TQILISTDLL ARGFDQSQVN LVVNYDLPVR HESPTEPDHE VYLHRIGRAG RFGRKGAIFN LLCSDRDNML MSKIENHFNH QVAEIPSWNS
501: EEDFENALKI AGLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.