Factsheet for GSMUA_Achr6P14220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	87.38	94.81
VIT_00s2262g00010.t01	Wine grape	cytosol	32.12	68.85
EER95473	Sorghum	cytosol	65.39	68.54
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	65.2	67.52
Zm00001d027728_P001	Maize	extracellular, plasma membrane	65.01	67.46
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	65.2	67.39
TraesCS4B01G274200.1	Wheat	cytosol	65.01	67.19
TraesCS4A01G031800.1	Wheat	cytosol	64.82	66.73
TraesCS5B01G534600.1	Wheat	cytosol	61.38	66.6
TraesCS5D01G532700.1	Wheat	cytosol	60.23	66.04
TraesCS4D01G272900.1	Wheat	cytosol	64.05	65.94
TraesCS4A01G340500.1	Wheat	cytosol	60.04	65.69
TraesCSU01G076700.1	Wheat	cytosol	59.85	65.62
Solyc04g082790.2.1	Tomato	plastid	62.33	65.33
Solyc10g085790.1.1	Tomato	nucleus	62.52	64.37
PGSC0003DMT400022137	Potato	nucleus	62.72	63.81
KRG99590	Soybean	endoplasmic reticulum, nucleus	56.41	60.45
CDX67556	Canola	cytosol	54.3	60.17
CDY13319	Canola	cytosol	56.21	60.0
VIT_08s0007g04400.t01	Wine grape	cytosol	58.32	59.45
Bra028547.1-P	Field mustard	cytosol	55.64	59.27
KRG93607	Soybean	nucleus	56.02	59.19
CDX95397	Canola	cytosol	55.64	58.91
Bra040687.1-P	Field mustard	cytosol	55.64	58.67
CDX76225	Canola	cytosol	55.45	58.47
AT3G53110.1	Thale cress	cytosol	54.88	57.86
VIT_08s0007g04430.t01	Wine grape	cytosol	31.93	53.7
GSMUA_Achr9P23810_001	Banana	cytosol	26.2	35.31
GSMUA_Achr2P19480_001	Banana	cytosol	24.67	34.86
GSMUA_Achr7P19690_001	Banana	cytosol	23.52	34.84
GSMUA_AchrUn_...	Banana	cytosol	24.47	34.59
GSMUA_Achr8P24670_001	Banana	cytosol	24.86	34.57
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	27.15	34.38
GSMUA_Achr10P...	Banana	cytosol	24.86	33.94
GSMUA_Achr3P27120_001	Banana	cytosol	21.61	33.93
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	24.86	29.75
GSMUA_Achr8P05380_001	Banana	cytosol	25.24	28.51
GSMUA_Achr5P12220_001	Banana	cytosol	26.58	28.25
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	26.39	28.05
GSMUA_Achr2P10560_001	Banana	cytosol	25.81	27.78
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	11.66	26.64
GSMUA_Achr9P13950_001	Banana	mitochondrion	15.11	25.73
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	23.71	24.9
GSMUA_Achr11P...	Banana	cytosol	26.58	24.6
GSMUA_Achr1P01890_001	Banana	plastid	19.69	19.47
GSMUA_Achr6P27990_001	Banana	plastid	17.4	18.76

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr6G14220_001	EnsemblPlants:GSMUA_Achr6P14220_001	EnsemblPlants:GSMUA_Achr6T14220_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0T6X0	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296D4A7
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 38 [Source:GMGC_GENE;Acc:GSMUA_Achr6G14220_001]

Coordinates

chr6:-:9368705..9374858

Molecular Weight (calculated)

58016.4 Da

IEP (calculated)

5.244

GRAVY (calculated)

-0.340

Length

523 amino acids

Sequence
(BLAST)

001: MADSAAPPAK AEEKRSWADE ESDEEQEAAA PPSQAADEAQ PSELKKIESL SISDVKDGGD RAPEDSDGGG RLLDDPDDSD IKAVTSGETV YNSAVAFEDL
101: KLSDELIKGL YVEMGFSRPS KIQAITLPMI LTPPYKDLVA QAHNGSGKTT CFVLGMLSRV DPRKKIPQAI CICPTRELAQ QNHAVLLKMG KYTGITSMCA
201: IPSDSANYIP INKRPSVTDQ VVIGTPGTIK KWTSARKLST RDVKILVFDE ADHMLAEAGL PNLFLILSRL LVLGVLPSAV VDGFRDDSER IMKEIQRSSG
301: GCQVLLFSAT FDEAVKAFVS RVIKDGNQIF VKKEELTLEK VKQYKVQCPD ELAKVEVIKD KIFEFGQKVG QTIIFVRTRN SARMLHQSLT EDGYECTSVQ
401: GALKQEDRDL IIKEFKAGLT KVLITTDLLA RGFDQRQVNL VINYDLPVKH ENPSEPDCEL YLHRVGRTGR FGSKGAVFNF LCTDRDRSVM EKIERHFQHH
501: IPEIPNWRSE EDFESALKDA GLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.