Factsheet for Solyc04g082790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085790.1.1	Tomato	nucleus	97.19	95.47
PGSC0003DMT400022137	Potato	nucleus	98.2	95.33
VIT_00s2262g00010.t01	Wine grape	cytosol	38.48	78.69
GSMUA_Achr10P...	Banana	nucleus	64.53	66.81
VIT_08s0007g04400.t01	Wine grape	cytosol	68.34	66.47
KRG99590	Soybean	endoplasmic reticulum, nucleus	62.12	63.52
CDX67556	Canola	cytosol	59.92	63.35
KRG93607	Soybean	nucleus	62.73	63.23
CDY13319	Canola	cytosol	61.72	62.86
GSMUA_Achr6P14220_001	Banana	cytosol	65.33	62.33
Bra028547.1-P	Field mustard	cytosol	61.32	62.32
VIT_08s0007g04430.t01	Wine grape	cytosol	38.68	62.06
CDX95397	Canola	cytosol	61.12	61.74
CDX76225	Canola	cytosol	60.92	61.29
Bra040687.1-P	Field mustard	cytosol	60.92	61.29
AT3G53110.1	Thale cress	cytosol	60.72	61.09
TraesCS5D01G532700.1	Wheat	cytosol	57.31	59.96
TraesCS4A01G340500.1	Wheat	cytosol	57.31	59.83
TraesCSU01G076700.1	Wheat	cytosol	57.11	59.75
EER95473	Sorghum	cytosol	59.72	59.72
TraesCS5B01G534600.1	Wheat	cytosol	57.52	59.54
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	59.72	58.89
TraesCS4B01G274200.1	Wheat	cytosol	59.72	58.89
Zm00001d027728_P001	Maize	extracellular, plasma membrane	59.12	58.53
TraesCS4D01G272900.1	Wheat	cytosol	59.52	58.46
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	59.12	58.42
TraesCS4A01G031800.1	Wheat	cytosol	59.32	58.27
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	26.85	34.01
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	26.25	33.5
Solyc08g062800.2.1	Tomato	extracellular, plastid	27.45	33.17
Solyc12g095990.1.1	Tomato	nucleus	27.25	32.93
Solyc07g040750.1.1	Tomato	cytosol	27.25	32.93
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	27.25	32.93
Solyc06g066060.2.1	Tomato	nucleus	24.05	29.27
Solyc10g017530.2.1	Tomato	nucleus	27.45	27.9
Solyc01g094350.2.1	Tomato	nucleus	25.85	25.9
Solyc08g061000.2.1	Tomato	nucleus	24.65	25.36
Solyc05g048850.2.1	Tomato	mitochondrion	26.25	24.39
Solyc08g080550.1.1	Tomato	nucleus	21.84	19.89
Solyc01g079800.2.1	Tomato	plastid	16.63	18.08

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4BW06	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g082790.2	EnsemblPlants:Solyc04g082790.2.1
UniParc:UPI0002766881	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:66333990..66338951

Molecular Weight (calculated)

55271.2 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.229

Length

499 amino acids

Sequence
(BLAST)

001: MADASITSTA TSSIAASTTA NPPESKSWAD QADEIDQAEQ SSASNEDAAA EINIGSLQVD ESKRDNSTLS DPEDSSIEAV TSGDTMYKSA KRFEDLNLSP
101: ELLKGLYVQM QFERPSKIQE ISLPMILTPP YKNLIAQAHN GSGKTTCFVL GMLSRIDPKL AAPQALCICP TRELAIQNME VLLKMGKFTG ITSELGIPAD
201: SANYIPISKR PPVTAQVVIG TPGTINKWVT GRKLGMSCMK ILVFDEADHM LAESGFQDDS IRIMKAIVKA SANCQVLLFS ATFGENVKAF VTKIVQDLFV
301: QDYNQMFVKK EELSLDSVKQ YKVQCPDELS KIMVIKDRIL ELGQKVGQTI IFVRTRNSAS MLHKSLVDYG YEVTTIQGAL RQEDRDKIIK EFKDGLTQIL
401: ISTDLLARGF DQSQVNLVVN YDLPVRHESP TEPDHEVYLH RIGRAGRFGR KGAIFNLLCS DRDNMLMSKI ENHFNHQVAE ISWNSEEDFE NALKIAGLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.