Factsheet for Zm00001d027728_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23508561

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95473	Sorghum	cytosol	96.03	96.99
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	86.71	86.53
TraesCS4D01G272900.1	Wheat	cytosol	87.1	86.42
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	86.71	86.36
TraesCS4A01G031800.1	Wheat	cytosol	86.9	86.22
TraesCS4B01G274200.1	Wheat	cytosol	86.51	86.17
TraesCS5D01G532700.1	Wheat	cytosol	77.78	82.18
TraesCSU01G076700.1	Wheat	cytosol	77.58	81.97
TraesCS4A01G340500.1	Wheat	cytosol	77.58	81.8
TraesCS5B01G534600.1	Wheat	cytosol	77.38	80.91
GSMUA_Achr10P...	Banana	nucleus	67.46	70.54
VIT_00s2262g00010.t01	Wine grape	cytosol	31.94	65.98
GSMUA_Achr6P14220_001	Banana	cytosol	67.46	65.01
KRG99590	Soybean	endoplasmic reticulum, nucleus	58.33	60.25
Solyc04g082790.2.1	Tomato	plastid	58.53	59.12
Solyc10g085790.1.1	Tomato	nucleus	58.53	58.07
PGSC0003DMT400022137	Potato	nucleus	58.73	57.59
KRG93607	Soybean	nucleus	56.35	57.37
CDX67556	Canola	cytosol	53.17	56.78
CDY13319	Canola	cytosol	55.16	56.73
CDX95397	Canola	cytosol	55.16	56.28
Bra028547.1-P	Field mustard	cytosol	54.76	56.21
Bra040687.1-P	Field mustard	cytosol	55.16	56.05
CDX76225	Canola	cytosol	55.16	56.05
AT3G53110.1	Thale cress	cytosol	54.37	55.24
VIT_08s0007g04400.t01	Wine grape	cytosol	56.15	55.17
VIT_08s0007g04430.t01	Wine grape	cytosol	31.94	51.77
Zm00001d051840_P003	Maize	extracellular, mitochondrion	26.98	33.42
Zm00001d014673_P001	Maize	plastid	26.59	32.37
Zm00001d036480_P001	Maize	plasma membrane, plastid	26.59	32.37
Zm00001d015251_P001	Maize	extracellular	26.19	32.2
Zm00001d018542_P006	Maize	cytosol	26.98	30.7
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	18.06	26.76
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	25.0	25.05
Zm00001d009761_P004	Maize	cytosol	24.21	24.95
Zm00001d051268_P004	Maize	extracellular	24.8	23.95
Zm00001d017384_P008	Maize	cytosol	24.8	23.81
Zm00001d011149_P002	Maize	cytosol	7.74	23.49
Zm00001d011790_P001	Maize	plastid	16.47	18.57
Zm00001d011150_P005	Maize	cytosol	16.87	18.36
Zm00001d017345_P002	Maize	plastid	20.63	16.38
Zm00001d016350_P001	Maize	vacuole	14.09	14.09
Zm00001d016351_P002	Maize	nucleus	21.03	11.88

Protein Annotations

EntrezGene:100193503	MapMan:16.11.3.1	Gene3D:3.40.50.300	UniProt:B6SLS0	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EMBL:EU953685	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008186	GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009719
GO:GO:0009737	GO:GO:0016020	GO:GO:0016787	GO:GO:0016973	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONL93772.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000182B3F8	EnsemblPlantsGene:Zm00001d027728
EnsemblPlants:Zm00001d027728_P001	EnsemblPlants:Zm00001d027728_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 38

Coordinates

chr1:+:12335763..12340666

Molecular Weight (calculated)

55796.7 Da

IEP (calculated)

5.224

GRAVY (calculated)

-0.314

Length

504 amino acids

Sequence
(BLAST)

001: MADKAASPEK KSWADVEEEE EAKAKATAAA EAAAAAAAAS SSSSITEPAV EEQAKQIEAL SLAPSVDDAA GEEGPPLLDD SDDSQIQAVI SGGTVYESAT
101: TFEDLKLSPE LLKGLHDEMG FSRPSKIQAI TLPMILTPPY KDLVAQAHNG SGKTTCFVLG MLSRVDPQRK IPQAICICPT RELAQQNKAV LMRMGKFTGI
201: TCACAIPPAQ KDYMPISKMA PITDQIVIGT SGTLIKWITH KKLATRDIKI LVFDEADHML AEDGFRSDSE RMMRDIQRSA GGCQVLLFSA TFNDRVKDFV
301: TKVIRDGNQI FVKKEELTLE KVKQYKVQVP DESAKIEVIR DKIFEFGQKV GQVIIFVRTK QSTKNVHNAL TREDYVCSSI QGSLDQSERE KIIQEFKDGY
401: TKVLISTDVL ARGFDQAQVN LVINYDMPIK FGTRDEPDYE VYLHRIGRAG RFGRKGAVFN LLCGQTDNVV MKKIEDYFQH SVPEVRNWQR EEDFEAALKD
501: AGLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.