Factsheet for Zm00001d051840_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07819	Sorghum	cytosol	99.51	99.51
Os01t0639100-01	Rice	nucleus	94.1	94.8
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	93.86	94.55
Zm00001d018542_P006	Maize	cytosol	99.51	91.42
GSMUA_Achr9P23810_001	Banana	cytosol	86.98	91.24
TraesCS2A01G552800.1	Wheat	cytosol	82.31	90.79
TraesCS2B01G584200.1	Wheat	mitochondrion	89.19	89.19
TraesCS6D01G401900.1	Wheat	nucleus	90.42	89.1
TraesCS6A01G416700.1	Wheat	nucleus	90.42	89.1
HORVU6Hr1G094560.1	Barley	cytosol	90.17	89.08
TraesCS2D01G554300.1	Wheat	nucleus	84.77	88.92
TraesCS6B01G472700.1	Wheat	nucleus	89.93	88.83
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	85.01	88.49
TraesCS2D01G553400.1	Wheat	cytosol	86.98	87.41
VIT_06s0080g00550.t01	Wine grape	cytosol	88.94	87.23
KRH37217	Soybean	endoplasmic reticulum	86.73	86.73
KRH12197	Soybean	nucleus	86.49	86.7
PGSC0003DMT400019783	Potato	cytosol	86.49	86.06
CDY33416	Canola	cytosol	84.52	84.31
Bra022449.1-P	Field mustard	cytosol	84.52	84.31
CDY51692	Canola	cytosol	84.28	84.07
CDY42205	Canola	cytosol	84.28	84.07
CDY24617	Canola	cytosol	84.28	84.07
CDY22956	Canola	cytosol	84.28	84.07
Bra038231.1-P	Field mustard	cytosol	84.28	84.07
Bra032127.1-P	Field mustard	cytosol	84.28	84.07
AT3G19760.1	Thale cress	cytosol	84.03	83.82
CDX82280	Canola	cytosol	84.03	83.82
GSMUA_Achr3P27120_001	Banana	cytosol	64.86	79.28
HORVU3Hr1G015500.1	Barley	cytosol	28.26	75.16
HORVU3Hr1G015460.1	Barley	cytosol	28.26	75.16
AT1G51380.1	Thale cress	cytosol	68.55	71.17
HORVU3Hr1G050890.1	Barley	cytosol	28.26	70.99
CDY58940	Canola	cytosol	70.02	70.54
Bra014267.1-P	Field mustard	cytosol	70.02	70.54
CDY03623	Canola	cytosol	69.78	70.3
CDY22577	Canola	cytosol	23.83	65.1
Zm00001d015251_P001	Maize	extracellular	63.15	62.68
Zm00001d036480_P001	Maize	plasma membrane, plastid	63.64	62.56
Zm00001d014673_P001	Maize	plastid	63.64	62.56
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	29.24	35.0
Zm00001d051268_P004	Maize	extracellular	36.85	28.74
Zm00001d017384_P008	Maize	cytosol	36.85	28.57
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	34.89	28.23
Zm00001d009761_P004	Maize	cytosol	33.66	28.02
Zm00001d027728_P001	Maize	extracellular, plasma membrane	33.42	26.98
Zm00001d011149_P002	Maize	cytosol	10.32	25.3
Zm00001d011150_P005	Maize	cytosol	24.57	21.6
Zm00001d016350_P001	Maize	vacuole	25.31	20.44
Zm00001d011790_P001	Maize	plastid	21.38	19.46
Zm00001d016351_P002	Maize	nucleus	40.05	18.27
Zm00001d017345_P002	Maize	plastid	24.82	15.91

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EntrezGene:732749	ProteinID:ABQ10647.1	ProteinID:AQK55212.1	ProteinID:AQK55213.1
EMBL:BT039346	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:DQ327709	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF57	UniProt:Q2MJJ9	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000067C8E8	EnsemblPlantsGene:Zm00001d051840	EnsemblPlants:Zm00001d051840_P003	EnsemblPlants:Zm00001d051840_T003	:

Description

RNA helicase 2

Coordinates

chr4:+:171940854..171944289

Molecular Weight (calculated)

45948.6 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.200

Length

407 amino acids

Sequence
(BLAST)

001: MAAPTTSRRG PGGARNMDDE NLTFETSPGV EVVSSFDQMG IKDDLLRGIY GYGFEKPSAI QQRAVLPIIN GRDVIAQAQS GTGKTSMISL TVCQIVDTAV
101: REVQALILSP TRELASQTER VMLAIGDHLN VQVHACIGGK SIGEDIRRLE NGVHVVSGTP GRVCDMIKRR TLRTRAIKLL VLDEADEMLS RGFKDQIYDV
201: YRYLPPELQV VLISATLPHE ILEMTSKFMT EPVRILVKRD ELTLEGIKQF FVAVEKEEWK FDTLCDLYDT LTITQAVIFC NTKRKVDWLT EKMRSNNFTV
301: SAMHGDMPQQ ERDAIMGEFR SGATRVLITT DVWARGLDVQ QVSLVINYDL PNNRELYIHR IGRSGRFGRK GVAINFVRKD DIRILRDIEQ YYSTQIDEMP
401: MNVADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.