Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12197 | Soybean | nucleus | 99.51 | 99.75 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 87.47 | 91.05 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 92.38 | 90.6 |
| PGSC0003DMT400019783 | Potato | cytosol | 90.17 | 89.73 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 85.26 | 89.43 |
| Os01t0639100-01 | Rice | nucleus | 86.98 | 87.62 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 79.36 | 87.53 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 86.49 | 87.13 |
| EES07819 | Sorghum | cytosol | 86.98 | 86.98 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 86.73 | 86.73 |
| AT3G19760.1 | Thale cress | cytosol | 86.0 | 85.78 |
| CDY33416 | Canola | cytosol | 85.75 | 85.54 |
| CDY24617 | Canola | cytosol | 85.75 | 85.54 |
| Bra022449.1-P | Field mustard | cytosol | 85.75 | 85.54 |
| CDY42205 | Canola | cytosol | 85.5 | 85.29 |
| CDX82280 | Canola | cytosol | 85.5 | 85.29 |
| Bra038231.1-P | Field mustard | cytosol | 85.5 | 85.29 |
| Bra032127.1-P | Field mustard | cytosol | 85.5 | 85.29 |
| CDY51692 | Canola | cytosol | 85.5 | 85.29 |
| CDY22956 | Canola | cytosol | 85.26 | 85.05 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 79.36 | 83.25 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 83.05 | 83.05 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 83.78 | 82.77 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 83.78 | 82.57 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 83.54 | 82.32 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 83.29 | 82.28 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 81.08 | 81.48 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 66.09 | 80.78 |
| Zm00001d018542_P006 | Maize | cytosol | 86.49 | 79.46 |
| AT1G51380.1 | Thale cress | cytosol | 70.27 | 72.96 |
| CDY58940 | Canola | cytosol | 72.24 | 72.77 |
| Bra014267.1-P | Field mustard | cytosol | 72.24 | 72.77 |
| CDY03623 | Canola | cytosol | 71.99 | 72.52 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 27.03 | 71.9 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 27.03 | 71.9 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 27.03 | 67.9 |
| CDY22577 | Canola | cytosol | 23.83 | 65.1 |
| KRH37426 | Soybean | cytosol, endoplasmic reticulum | 63.15 | 62.23 |
| KRH12430 | Soybean | cytosol | 63.15 | 62.23 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 63.15 | 62.23 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 62.65 | 61.74 |
| KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 62.16 | 61.26 |
| KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 62.16 | 61.26 |
| KRH23270 | Soybean | cytosol | 61.18 | 60.29 |
| KRH10048 | Soybean | cytosol, endoplasmic reticulum | 61.18 | 60.29 |
| KRH47074 | Soybean | nucleus | 60.93 | 60.05 |
| KRH44102 | Soybean | nucleus | 61.18 | 59.14 |
| KRH04755 | Soybean | cytosol | 21.62 | 33.21 |
| KRH44441 | Soybean | cytosol, nucleus | 32.92 | 31.46 |
| KRH47464 | Soybean | nucleus | 32.92 | 31.46 |
| KRH52452 | Soybean | nucleus | 32.68 | 31.15 |
| KRH61783 | Soybean | cytosol | 32.68 | 31.15 |
| KRH48173 | Soybean | mitochondrion | 35.38 | 28.8 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 35.38 | 28.69 |
| KRH65096 | Soybean | nucleus | 35.14 | 28.66 |
| KRH48170 | Soybean | endoplasmic reticulum | 35.38 | 28.63 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 33.91 | 28.28 |
| KRG93607 | Soybean | nucleus | 34.15 | 28.08 |
| KRH40488 | Soybean | cytosol | 35.14 | 26.53 |
| KRH02098 | Soybean | cytosol | 12.04 | 21.3 |
| KRH43643 | Soybean | nucleus | 28.01 | 20.28 |
| KRH13813 | Soybean | nucleus | 28.01 | 20.28 |
| KRH51049 | Soybean | plastid | 23.1 | 19.92 |
Protein Annotations
| EntrezGene:100800020 | MapMan:17.3.1.1.1 | Gene3D:3.40.50.300 | EMBL:ACUP02005431 | InterPro:DEAD/DEAH_box_helicase_dom | EnsemblPlantsGene:GLYMA_09G052500 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0071013 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| UniProt:I1L171 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KRH37217 | ProteinID:KRH37217 |
| ProteinID:KRH37217.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0001B3428F | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:4602175..4606166
Molecular Weight (calculated)
46031.7 Da
IEP (calculated)
6.099
GRAVY (calculated)
-0.196
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTSVVPAN RRRAAANPAE DMDFETTEGV KAIASFEEMG IKDDLLRGIY QYGFEKPSAI QQRAVTPIIQ GRDVIAQAQS GTGKTSMIAL TVCQVVDTSV
101: REVQALILSP TRELASQTEK VILAIGDFIN IQAHACVGGK SVGEDIRKLE YGVHVVSGTP GRVCDMIKRR TLRTRAIKML VLDESDEMLS RGFKDQIYDV
201: YRYLPPDLQV CLISATLPHE ILEMTNKFMT DPVRILVKRD ELTLEGIKQF FVAVEREEWK FDTLCDLYDT LTITQAVIFC NTKRKVDWLT EKMRNNNFTV
301: SSMHGDMPQK ERDAIMGEFR AGTTRVLITT DVWARGLDVQ QVSLVINYDL PNNRELYIHR IGRSGRFGRK GVAINFVKSD DIKILRDIEQ YYSTQIDEMP
401: MNVADLI
101: REVQALILSP TRELASQTEK VILAIGDFIN IQAHACVGGK SVGEDIRKLE YGVHVVSGTP GRVCDMIKRR TLRTRAIKML VLDESDEMLS RGFKDQIYDV
201: YRYLPPDLQV CLISATLPHE ILEMTNKFMT DPVRILVKRD ELTLEGIKQF FVAVEREEWK FDTLCDLYDT LTITQAVIFC NTKRKVDWLT EKMRNNNFTV
301: SSMHGDMPQK ERDAIMGEFR AGTTRVLITT DVWARGLDVQ QVSLVINYDL PNNRELYIHR IGRSGRFGRK GVAINFVKSD DIKILRDIEQ YYSTQIDEMP
401: MNVADLI
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Arabidopsis Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.