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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • nucleus 1
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH62823
KRH70630
KRH70633
KRH75529

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45810.1 KRH62823 AT1G26110.1 21798944
AT2G45810.1 KRH70630 AT1G26110.1 21798944
AT2G45810.1 KRH70633 AT1G26110.1 21798944
AT2G45810.1 KRH75529 AT1G26110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH48173 Soybean mitochondrion 97.61 98.2
KRH04755 Soybean cytosol 50.7 96.23
KRH65096 Soybean nucleus 95.43 96.19
KRH65098 Soybean endoplasmic reticulum, nucleus 95.43 95.62
CDY54061 Canola cytosol 58.85 90.8
CDY45702 Canola cytosol 35.79 87.38
Bra008527.1-P Field mustard cytosol 56.86 86.67
CDY51147 Canola cytosol 84.29 85.48
AT4G00660.1 Thale cress cytosol, mitochondrion 85.69 85.35
CDY07205 Canola cytosol 82.9 84.93
CDX91901 Canola cytosol 84.29 84.63
Bra037351.1-P Field mustard cytosol 85.49 84.31
CDX74342 Canola cytosol 85.29 83.46
Bra000965.1-P Field mustard cytosol 85.09 83.43
Zm00001d013910_P002 Maize endoplasmic reticulum, vacuole 56.26 83.24
Os04t0533000-02 Rice cytosol 82.11 82.93
Os02t0641800-02 Rice plasma membrane, plastid 83.7 82.87
TraesCS2B01G387200.1 Wheat cytosol 81.71 82.36
TraesCS2A01G370200.2 Wheat cytosol 81.31 81.64
HORVU6Hr1G060630.1 Barley cytosol 83.7 81.27
Zm00001d051268_P004 Maize extracellular 83.7 80.65
TraesCS2D01G366700.1 Wheat cytosol 81.31 80.51
TraesCS6A01G236800.1 Wheat cytosol 83.5 80.31
TraesCS6B01G265300.1 Wheat cytosol 83.5 80.31
TraesCS6D01G219400.1 Wheat cytosol 83.1 79.92
Zm00001d017384_P008 Maize cytosol 83.3 79.81
Bra007587.1-P Field mustard cytosol 74.75 79.49
Bra003442.1-P Field mustard cytosol 75.35 79.45
CDY58787 Canola cytosol 75.94 79.25
AT3G61240.1 Thale cress cytosol 78.33 79.12
Zm00001d032526_P006 Maize cytosol, mitochondrion, nucleus 78.33 78.33
CDY48935 Canola cytosol, plastid 73.96 78.32
KRH40488 Soybean cytosol 83.9 78.29
CDX71756 Canola cytosol 74.55 78.29
Os10t0503700-01 Rice plasma membrane 80.91 78.12
EER91410 Sorghum cytosol 78.53 77.91
EER91411 Sorghum cytosol 78.33 77.71
CDY37067 Canola cytosol 78.53 77.45
TraesCS1A01G174600.1 Wheat cytosol 80.12 76.76
CDY27357 Canola cytosol, plastid 77.53 76.62
TraesCS1B01G189900.1 Wheat cytosol 79.92 76.57
Bra039312.1-P Field mustard cytosol 78.53 76.4
TraesCS1D01G164500.1 Wheat cytosol 79.72 76.24
AT2G45810.1 Thale cress cytosol, plastid 79.92 76.14
GSMUA_Achr11P... Banana cytosol 84.69 75.4
HORVU1Hr1G046020.1 Barley cytosol 79.72 71.1
KRH52210 Soybean cytosol, endoplasmic reticulum 29.82 36.32
KRH23270 Soybean cytosol 29.82 36.32
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 29.82 36.32
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 29.82 36.32
KRH10048 Soybean cytosol, endoplasmic reticulum 29.82 36.32
KRH47074 Soybean nucleus 29.62 36.08
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 29.62 36.08
KRH37426 Soybean cytosol, endoplasmic reticulum 29.62 36.08
KRH12430 Soybean cytosol 29.62 36.08
KRH44102 Soybean nucleus 29.82 35.63
KRH12197 Soybean nucleus 28.63 35.47
KRH37217 Soybean endoplasmic reticulum 28.63 35.38
KRH61783 Soybean cytosol 29.82 35.13
KRH52452 Soybean nucleus 29.82 35.13
KRH47464 Soybean nucleus 29.03 34.27
KRH44441 Soybean cytosol, nucleus 29.03 34.27
KRG99590 Soybean endoplasmic reticulum, nucleus 27.04 27.87
KRG93607 Soybean nucleus 26.64 27.07
KRH02098 Soybean cytosol 9.54 20.87
KRH51049 Soybean plastid 17.89 19.07
KRH43643 Soybean nucleus 21.27 19.04
KRH13813 Soybean nucleus 21.07 18.86
Protein Annotations
EntrezGene:100800861Gene3D:3.40.50.300MapMan:35.1EMBL:ACUP02004208ncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_07G072700GO:GO:0000166GO:GO:0000932GO:GO:0003674GO:GO:0003676GO:GO:0003824
GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139GO:GO:0006412
GO:GO:0006417GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0010494
GO:GO:0010501GO:GO:0016043GO:GO:0016787GO:GO:0019538GO:GO:0033962InterPro:Helicase_ATP-bd
InterPro:Helicase_CUniProt:I1KID0InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH48170
ProteinID:KRH48170ProteinID:KRH48170.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039
PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF555InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI00023381E0SEG:seg
Description
hypothetical protein
Coordinates
chr7:+:6612725..6619961
Molecular Weight (calculated)
57762.4 Da
IEP (calculated)
8.520
GRAVY (calculated)
-0.465
Length
503 amino acids
Sequence
(BLAST)
001: MNHNNSNNNR ARYPPGMGLG RGGFNPNLSQ NPNQNQNHHA FQARPPYHQQ QQAQYVQRHL LQQQQQQQQQ QQQQQQQWLR RDANAVDEVE KTVQSEAVDS
101: SSQDWKARLK IPPADTRYKT EDVTATKGNE FEDYFLKREL LMGIYEKGFE RPSPIQEESI PIALTGSDIL ARAKNGTGKT AAFCIPALEK IDQDNNVIQV
201: VILVPTRELA LQTSQVCKEL GKHLKIQVMV TTGGTSLKDD ILRLYQPVHL LVGTPGRILD LTKKGVCILK DCAMLVMDEA DKLLSPEFQP SIEQLIHFLP
301: TTRQILMFSA TFPVTVKDFK DRYLQKPYVI NLMDELTLKG ITQFYAFVEE RQKVHCLNTL FSKLQINQSI IFCNSVNRVE LLAKKITELG YSCFYIHAKM
401: LQDHRNRVFH DFRNGACRNL VCTDLFTRGI DIQAVNVVIN FDFPKNAETY LHRVGRSGRF GHLGLAVNLI TYEDRFNLYR IEQELGTEIK QIPPQIDQAI
501: YCR
Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.