Factsheet for Zm00001d051268_P004

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008439_P001
Zm00001d027310_P001
Zm00001d040142_P001
Zm00001d051566_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Zm00001d008439_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d027310_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d040142_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d051566_P001	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017384_P008	Maize	cytosol	94.06	93.52
KRH04755	Soybean	cytosol	46.55	91.7
HORVU6Hr1G060630.1	Barley	cytosol	89.27	89.96
TraesCS6A01G236800.1	Wheat	cytosol	89.66	89.48
TraesCS6D01G219400.1	Wheat	cytosol	88.89	88.72
CDY54061	Canola	cytosol	55.36	88.65
TraesCS6B01G265300.1	Wheat	cytosol	88.7	88.53
CDY45702	Canola	cytosol	34.29	86.89
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	79.5	86.46
Bra008527.1-P	Field mustard	cytosol	53.83	85.15
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	54.98	84.41
Solyc10g017530.2.1	Tomato	nucleus	79.31	84.32
KRH48170	Soybean	endoplasmic reticulum	80.65	83.7
KRH48173	Soybean	mitochondrion	79.69	83.2
KRH65096	Soybean	nucleus	79.31	82.97
Solyc01g094350.2.1	Tomato	nucleus	79.12	82.93
KRH65098	Soybean	endoplasmic reticulum, nucleus	79.69	82.87
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	78.74	81.71
AT4G00660.1	Thale cress	cytosol, mitochondrion	78.54	81.19
CDY51147	Canola	cytosol	76.25	80.24
CDX91901	Canola	cytosol	77.01	80.24
CDY07205	Canola	cytosol	75.29	80.04
Bra037351.1-P	Field mustard	cytosol	77.39	79.22
CDX74342	Canola	cytosol	77.78	78.99
Bra000965.1-P	Field mustard	cytosol	77.59	78.95
Bra007587.1-P	Field mustard	cytosol	70.5	77.8
Bra003442.1-P	Field mustard	cytosol	71.07	77.78
CDY58787	Canola	cytosol	71.65	77.59
AT3G61240.1	Thale cress	cytosol	73.75	77.31
CDY48935	Canola	cytosol, plastid	69.92	76.84
CDX71756	Canola	cytosol	70.11	76.41
CDY37067	Canola	cytosol	73.56	75.29
CDY27357	Canola	cytosol, plastid	72.99	74.85
GSMUA_Achr11P...	Banana	cytosol	80.46	74.34
Bra039312.1-P	Field mustard	cytosol	73.56	74.27
AT2G45810.1	Thale cress	cytosol, plastid	74.71	73.86
Solyc05g048850.2.1	Tomato	mitochondrion	72.22	70.2
Zm00001d014673_P001	Maize	plastid	29.5	37.2
Zm00001d036480_P001	Maize	plasma membrane, plastid	29.31	36.96
Zm00001d051840_P003	Maize	extracellular, mitochondrion	28.74	36.85
Zm00001d015251_P001	Maize	extracellular	28.93	36.83
Zm00001d018542_P006	Maize	cytosol	28.74	33.86
Zm00001d009761_P004	Maize	cytosol	27.97	29.86
Zm00001d011149_P002	Maize	cytosol	9.39	29.52
Zm00001d027728_P001	Maize	extracellular, plasma membrane	23.95	24.8
Zm00001d011150_P005	Maize	cytosol	19.92	22.46
Zm00001d011790_P001	Maize	plastid	17.82	20.81
Zm00001d017345_P002	Maize	plastid	20.5	16.85
Zm00001d016350_P001	Maize	vacuole	14.94	15.48
Zm00001d016351_P002	Maize	nucleus	24.14	14.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6Q5Y2	ProteinID:AQK53934.1	ProteinID:AQK53935.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008459E75	EnsemblPlantsGene:Zm00001d051268	EnsemblPlants:Zm00001d051268_P004
EnsemblPlants:Zm00001d051268_T004	SEG:seg	:	:	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr4:+:151295202..151303295

Molecular Weight (calculated)

59519.3 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.553

Length

522 amino acids

Sequence
(BLAST)

001: MDPRARYPSG VGNGRGGTPN YYGRGPSPQQ PHQHHQQQQQ QKQTSGAHHH QQYAQRQQQQ HRHSHNHQQQ QQQHQSHQQQ QQQQQWLRRN QIAREAAGAA
101: VTSEPKALAP STAADGVNSS SQDWKAQLKL PPPDTRYRTE DVTATKGNEF EDYFLKRELL MGIYEKGFER PSPIQEESIP IALTGSDILA RAKNGTGKTA
201: AFCIPALEKI DQEKNAIQVV ILVPTRELAL QTSQVCKELG KHLKIQVMVT TGGTSLKDDI VRLYQPVHLI VGTPGRILDL TKKGVCILKD CSMLIMDEAD
301: KLLSPEFQPS IEQLIRYLPA SRQILMFSAT FPVTVKEFKD KYLPKPYVIN LMDELTLKGI TQFYAFVEER QKVHCLNTLF SKLQINQSII FCNSVNRVEL
401: LAKKITELGY SCFYIHAKML QDHRNRVFHD FRNGACRNLV CTDLFTRGID IQAVNVVINF DFPKNSETYL HRVGRSGRFG HLGLAVNLIT YEDRFNLYRI
501: EQELGTEIKP IPPQIDQAIY CQ

Best Arabidopsis Sequence Match ( AT3G61240.2 )
(BLAST)

001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ

Arabidopsis Description

RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.