Factsheet for GSMUA_Achr11P21200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20740_001
GSMUA_Achr2P07060_001
GSMUA_Achr9P00760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	GSMUA_Achr1P20740_001	AT1G26110.1	21798944
AT2G45810.1	GSMUA_Achr2P07060_001	AT1G26110.1	21798944
AT2G45810.1	GSMUA_Achr9P00760_001	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04755	Soybean	cytosol	43.54	92.83
CDY54061	Canola	cytosol	51.68	89.57
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	77.7	89.23
GSMUA_Achr5P12220_001	Banana	cytosol	76.99	88.41
VIT_15s0046g03200.t01	Wine grape	cytosol	76.64	88.19
GSMUA_Achr2P10560_001	Banana	cytosol	75.75	88.07
CDY45702	Canola	cytosol	31.5	86.41
Bra008527.1-P	Field mustard	cytosol	50.09	85.76
KRH48173	Soybean	mitochondrion	75.58	85.4
KRH65098	Soybean	endoplasmic reticulum, nucleus	75.75	85.26
KRH65096	Soybean	nucleus	75.04	84.97
KRH48170	Soybean	endoplasmic reticulum	75.4	84.69
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	50.62	84.12
Os02t0641800-02	Rice	plasma membrane, plastid	75.04	83.46
Os04t0533000-02	Rice	cytosol	73.27	83.13
TraesCS2B01G387200.1	Wheat	cytosol	72.92	82.57
CDY51147	Canola	cytosol	72.04	82.06
TraesCS2A01G370200.2	Wheat	cytosol	72.39	81.64
AT4G00660.1	Thale cress	cytosol, mitochondrion	72.92	81.58
HORVU6Hr1G060630.1	Barley	cytosol	74.69	81.47
CDY07205	Canola	cytosol	70.8	81.47
CDX91901	Canola	cytosol	72.21	81.44
Bra037351.1-P	Field mustard	cytosol	73.1	80.98
TraesCS2D01G366700.1	Wheat	cytosol	72.74	80.91
TraesCS6B01G265300.1	Wheat	cytosol	74.69	80.69
Zm00001d051268_P004	Maize	extracellular	74.34	80.46
TraesCS6D01G219400.1	Wheat	cytosol	74.34	80.31
TraesCS6A01G236800.1	Wheat	cytosol	74.34	80.31
Zm00001d017384_P008	Maize	cytosol	74.34	80.0
CDX74342	Canola	cytosol	72.74	79.96
Bra000965.1-P	Field mustard	cytosol	72.57	79.92
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	70.44	79.13
Bra007587.1-P	Field mustard	cytosol	65.84	78.65
EER91410	Sorghum	cytosol	70.44	78.5
Bra003442.1-P	Field mustard	cytosol	66.19	78.41
EER91411	Sorghum	cytosol	70.09	78.11
TraesCS1B01G189900.1	Wheat	cytosol	72.57	78.1
TraesCS1A01G174600.1	Wheat	cytosol	72.57	78.1
CDY58787	Canola	cytosol	66.37	77.8
TraesCS1D01G164500.1	Wheat	cytosol	72.39	77.76
CDX71756	Canola	cytosol	65.84	77.66
CDY48935	Canola	cytosol, plastid	65.13	77.47
Os10t0503700-01	Rice	plasma membrane	71.33	77.35
AT3G61240.1	Thale cress	cytosol	67.79	76.91
CDY37067	Canola	cytosol	68.85	76.27
CDY27357	Canola	cytosol, plastid	68.14	75.64
Bra039312.1-P	Field mustard	cytosol	68.85	75.24
HORVU1Hr1G046020.1	Barley	cytosol	74.69	74.82
AT2G45810.1	Thale cress	cytosol, plastid	69.56	74.43
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	26.73	36.56
GSMUA_Achr9P23810_001	Banana	cytosol	24.96	36.34
GSMUA_AchrUn_...	Banana	cytosol	23.54	35.95
GSMUA_Achr2P19480_001	Banana	cytosol	23.54	35.95
GSMUA_Achr8P24670_001	Banana	cytosol	23.89	35.9
GSMUA_Achr10P...	Banana	cytosol	24.07	35.51
GSMUA_Achr7P19690_001	Banana	cytosol	21.95	35.13
GSMUA_Achr3P27120_001	Banana	cytosol	20.0	33.93
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	12.92	31.88
GSMUA_Achr8P05380_001	Banana	cytosol	25.66	31.32
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	23.54	30.43
GSMUA_Achr10P...	Banana	nucleus	24.42	28.63
GSMUA_Achr9P13950_001	Banana	mitochondrion	15.4	28.34
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	23.72	26.91
GSMUA_Achr6P14220_001	Banana	cytosol	24.6	26.58
GSMUA_Achr6P27990_001	Banana	plastid	15.75	18.35
GSMUA_Achr1P01890_001	Banana	plastid	16.64	17.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr11G21200_001
EnsemblPlants:GSMUA_Achr11P21200_001	EnsemblPlants:GSMUA_Achr11T21200_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0RU50	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295442E	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 8 [Source:GMGC_GENE;Acc:GSMUA_Achr11G21200_001]

Coordinates

chr11:+:21917728..21927207

Molecular Weight (calculated)

64094.7 Da

IEP (calculated)

8.899

GRAVY (calculated)

-0.255

Length

565 amino acids

Sequence
(BLAST)

001: MALLMFADAS NPTPPYPISI FPDASEGFFV INLRTVLSVV VALKTYPRRT LIQKFVGCQV RSALDEETVR VIRSKLEMNP QGRYPPPGMG GSGAGANPNF
101: YARNPQHQQQ YVQRNPMQGQ QNHQFQPQQH QHWSRRNQMG GDSGVGEVVK AVQSDAVTLM DSSSQDWKAL LKIPPSDTRY RTEDVTATKG NEFEDYFLKR
201: ELLMGIYEKG FERPSPIQEE SIPIALTGSN ILARAKNGTG KTAAFCIPAL EKIDQDRNVI QVVILVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK
301: DDIMRLYQPV HLLVGTPGRI LDLAKKGVCI LKDCSMLIMD EADKLLAPEF QPSVEQLIRF LPASRQILLF SATFPVTVKD FKDRYLPKPY IINLMDELTL
401: KGITQYYAFV EERQKVHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV
501: INFDFPKNSE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPQIDQ AIYCR

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.