Factsheet for GSMUA_Achr5P22650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	67.69	37.53
GSMUA_Achr2P19480_001	Banana	cytosol	52.84	32.7
GSMUA_Achr8P24670_001	Banana	cytosol	53.28	32.45
GSMUA_AchrUn_...	Banana	cytosol	51.97	32.16
GSMUA_Achr10P...	Banana	cytosol	53.71	32.11
GSMUA_Achr3P27120_001	Banana	cytosol	45.41	31.23
GSMUA_Achr7P19690_001	Banana	cytosol	46.72	30.31
GSMUA_Achr9P23810_001	Banana	cytosol	49.78	29.38
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	51.97	27.23
GSMUA_Achr9P13950_001	Banana	mitochondrion	31.88	23.78
GSMUA_Achr5P12220_001	Banana	cytosol	32.75	15.24
GSMUA_Achr2P10560_001	Banana	cytosol	32.31	15.23
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	32.31	15.04
GSMUA_Achr8P05380_001	Banana	cytosol	27.51	13.61
GSMUA_Achr11P...	Banana	cytosol	31.88	12.92
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	27.07	12.45
GSMUA_Achr10P...	Banana	nucleus	26.2	12.45
GSMUA_Achr6P14220_001	Banana	cytosol	26.64	11.66
GSMUA_Achr1P01890_001	Banana	plastid	21.83	9.45
GSMUA_Achr6P27990_001	Banana	plastid	17.47	8.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr5G22650_001	EnsemblPlants:GSMUA_Achr5P22650_001	EnsemblPlants:GSMUA_Achr5T22650_001	InterPro:Helicase_ATP-bd
InterPro:IPR014001	UniProt:M0T0U0	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192
PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000294EB2B
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G22650_001]

Coordinates

chr5:+:24625059..24625966

Molecular Weight (calculated)

26410.4 Da

IEP (calculated)

9.224

GRAVY (calculated)

-0.065

Length

229 amino acids

Sequence
(BLAST)

001: MVYTSMITFS CDPFHATLRS GIHQLMMTLP PSVLEFCSSL TMAWWNARPC CLLPPEKWHS KSRSGRIDQR VLFGGVHAVV GTPGRVLDVL RRRYLRPDHI
101: KMFVLDEADE MLSRGFKDQI YDIFQLLPSR VQVGLLSATM PPEALEITKK FVNKPVRILV KRDELTLEGI TQYYVNVDKE EWKFDTLCDL NELVAISQSV
201: IIVNTRRKGH HIIMREFRSG SSRVLVNYV

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.