Factsheet for GSMUA_Achr3P27120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23810_001	Banana	cytosol	85.89	73.71
TraesCS2A01G552800.1	Wheat	cytosol	76.28	68.83
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	80.78	68.8
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	80.78	66.58
Os01t0639100-01	Rice	nucleus	80.48	66.34
KRH12197	Soybean	nucleus	80.78	66.26
KRH37217	Soybean	endoplasmic reticulum	80.78	66.09
PGSC0003DMT400019783	Potato	cytosol	80.48	65.53
VIT_06s0080g00550.t01	Wine grape	cytosol	81.38	65.3
Zm00001d051840_P003	Maize	extracellular, mitochondrion	79.28	64.86
EES07819	Sorghum	cytosol	78.98	64.62
AT3G19760.1	Thale cress	cytosol	78.98	64.46
CDY51692	Canola	cytosol	78.68	64.22
Bra022449.1-P	Field mustard	cytosol	78.68	64.22
CDY24617	Canola	cytosol	78.68	64.22
CDY33416	Canola	cytosol	78.68	64.22
HORVU3Hr1G015460.1	Barley	cytosol	29.43	64.05
HORVU3Hr1G015500.1	Barley	cytosol	29.43	64.05
CDX82280	Canola	cytosol	78.38	63.97
CDY22956	Canola	cytosol	78.38	63.97
Bra038231.1-P	Field mustard	cytosol	78.38	63.97
Bra032127.1-P	Field mustard	cytosol	78.38	63.97
CDY42205	Canola	cytosol	78.38	63.97
TraesCS2B01G584200.1	Wheat	mitochondrion	77.48	63.39
TraesCS2D01G554300.1	Wheat	nucleus	73.27	62.89
TraesCS6B01G472700.1	Wheat	nucleus	76.88	62.14
HORVU6Hr1G094560.1	Barley	cytosol	76.88	62.14
TraesCS6A01G416700.1	Wheat	nucleus	76.88	61.99
TraesCS6D01G401900.1	Wheat	nucleus	76.88	61.99
TraesCS2D01G553400.1	Wheat	cytosol	74.77	61.48
HORVU3Hr1G050890.1	Barley	cytosol	29.43	60.49
Zm00001d018542_P006	Maize	cytosol	78.98	59.37
CDY22577	Canola	cytosol	24.32	54.36
AT1G51380.1	Thale cress	cytosol	63.36	53.83
CDY58940	Canola	cytosol	64.56	53.22
Bra014267.1-P	Field mustard	cytosol	64.56	53.22
CDY03623	Canola	cytosol	64.26	52.97
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	31.23	45.41
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	54.95	44.31
GSMUA_Achr10P...	Banana	cytosol	47.75	41.51
GSMUA_Achr8P24670_001	Banana	cytosol	46.85	41.49
GSMUA_Achr2P19480_001	Banana	cytosol	45.95	41.35
GSMUA_AchrUn_...	Banana	cytosol	45.65	41.08
GSMUA_Achr7P19690_001	Banana	cytosol	42.94	40.51
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	45.95	35.01
GSMUA_Achr9P13950_001	Banana	mitochondrion	26.43	28.66
GSMUA_Achr2P10560_001	Banana	cytosol	33.93	23.25
GSMUA_Achr5P12220_001	Banana	cytosol	33.93	22.97
GSMUA_Achr8P05380_001	Banana	cytosol	31.83	22.89
GSMUA_Achr10P...	Banana	nucleus	33.03	22.82
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	33.33	22.56
GSMUA_Achr6P14220_001	Banana	cytosol	33.93	21.61
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	31.53	21.08
GSMUA_Achr11P...	Banana	cytosol	33.93	20.0
GSMUA_Achr1P01890_001	Banana	plastid	24.02	15.12
GSMUA_Achr6P27990_001	Banana	plastid	21.92	15.05

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G27120_001
EnsemblPlants:GSMUA_Achr3P27120_001	EnsemblPlants:GSMUA_Achr3T27120_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M0SI78	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00029495E4	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 34 [Source:GMGC_GENE;Acc:GSMUA_Achr3G27120_001]

Coordinates

chr3:+:26709652..26715106

Molecular Weight (calculated)

37987.5 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.030

Length

333 amino acids

Sequence
(BLAST)

001: MIALSVCQMV DTTTREVQAL ILSPTRELAA QTEKVILAIG EYINVQAHAC IGGKSIGEDI RKLEYGVHVV SGTPGRVCDM IKRRTLRTRA IKILILDEAD
101: EMLSRGFKDQ IYDVYRYLPP ELQVALISAT LPHEILEMTN KFMTDPIRIL VKRDELTLEG IKQFFVAVER EEWKFDTLCD LYDTLVITQA VIFCNTKRKK
201: YAIIVVSHGS GILNYHLSSI HGDMPQKERD AIMAEFRSGA TRVSITTDVW ARGIVVSLVI NYDLPNNREL YIHRIGRSGR FGRKVTIHFP SWDDIHILRD
301: IEQYHSTQID EMPMNIVLVS SLKITKNVSK KVI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.