Factsheet for GSMUA_Achr8P05380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06660.t01	Wine grape	cytosol	88.34	95.56
PGSC0003DMT400053566	Potato	cytosol	86.83	94.15
AT5G11170.1	Thale cress	cytosol	85.96	93.21
KXG22711	Sorghum	cytosol	85.96	92.77
KXG32708	Sorghum	cytosol	85.1	92.06
PGSC0003DMT400052757	Potato	cytosol	84.88	91.82
KRH52452	Soybean	nucleus	84.67	91.8
KRH47464	Soybean	nucleus	84.45	91.78
KRH44441	Soybean	cytosol, nucleus	84.45	91.78
KRH61783	Soybean	cytosol	84.45	91.57
Solyc06g066060.2.1	Tomato	nucleus	80.78	91.22
TraesCS1B01G477500.1	Wheat	cytosol	84.67	90.95
TraesCS3B01G224400.1	Wheat	cytosol	83.8	90.65
TraesCS3D01G204400.1	Wheat	cytosol	83.59	90.42
Bra023311.1-P	Field mustard	cytosol	83.37	90.4
TraesCS1A01G443400.1	Wheat	cytosol	84.67	90.32
TraesCS1D01G451300.1	Wheat	cytosol	82.51	90.31
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	84.23	90.28
Os01t0549700-01	Rice	cytosol, plastid	84.02	90.05
Bra023312.1-P	Field mustard	cytosol	84.23	89.45
CDY51112	Canola	cytosol	84.88	89.32
VIT_04s0008g05330.t01	Wine grape	cytosol	87.47	88.62
TraesCS3A01G200100.1	Wheat	cytosol	83.15	88.3
CDX85725	Canola	cytosol	84.23	88.24
CDX70383	Canola	cytosol	84.45	87.47
Bra008984.1-P	Field mustard	cytosol	79.7	86.62
Solyc08g061000.2.1	Tomato	nucleus	86.61	82.68
HORVU1Hr1G095100.5	Barley	cytosol	83.37	82.3
AT5G11200.2	Thale cress	cytosol	85.96	81.89
Zm00001d009761_P004	Maize	cytosol	85.75	81.19
CDX69778	Canola	cytosol	85.31	79.8
CDX85726	Canola	cytosol	84.02	79.39
CDX78412	Canola	cytosol	84.67	78.87
CDY71952	Canola	cytosol	70.41	78.18
Bra008983.1-P	Field mustard	cytosol	79.48	77.97
CDY51111	Canola	cytosol	40.82	75.9
CDX69777	Canola	cytosol, nucleus, plasma membrane	85.53	75.72
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	80.99	75.3
Bra006091.1-P	Field mustard	cytosol	77.97	68.89
Zm00001d011149_P002	Maize	cytosol	24.41	68.07
Zm00001d011150_P005	Maize	cytosol	64.36	64.36
CDY56825	Canola	cytosol	28.08	57.02
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	28.73	44.48
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	32.83	36.8
GSMUA_Achr8P24670_001	Banana	cytosol	29.59	36.44
GSMUA_Achr2P19480_001	Banana	cytosol	28.94	36.22
GSMUA_Achr7P19690_001	Banana	cytosol	27.43	35.98
GSMUA_Achr10P...	Banana	cytosol	29.59	35.77
GSMUA_AchrUn_...	Banana	cytosol	28.51	35.68
GSMUA_Achr9P23810_001	Banana	cytosol	28.51	34.02
GSMUA_Achr3P27120_001	Banana	cytosol	22.89	31.83
GSMUA_Achr5P12220_001	Banana	cytosol	32.4	30.49
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	28.73	30.43
GSMUA_Achr2P10560_001	Banana	cytosol	31.75	30.25
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	31.75	29.88
GSMUA_Achr9P13950_001	Banana	mitochondrion	19.44	29.32
GSMUA_Achr10P...	Banana	nucleus	28.73	27.59
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	13.61	27.51
GSMUA_Achr11P...	Banana	cytosol	31.32	25.66
GSMUA_Achr6P14220_001	Banana	cytosol	28.51	25.24
GSMUA_Achr1P01890_001	Banana	plastid	20.73	18.15
GSMUA_Achr6P27990_001	Banana	plastid	18.36	17.53

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr8G05380_001	EnsemblPlants:GSMUA_Achr8P05380_001	EnsemblPlants:GSMUA_Achr8T05380_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TMU1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00029621C3	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 56 [Source:GMGC_GENE;Acc:GSMUA_Achr8G05380_001]

Coordinates

chr8:-:3509634..3516708

Molecular Weight (calculated)

52368.3 Da

IEP (calculated)

5.859

GRAVY (calculated)

-0.148

Length

463 amino acids

Sequence
(BLAST)

001: MGEARDNDAY EEELLDYEEE EEKAPDSAAA KASGEAVKKG YVGIHSSGFR DFLLKPELLR AIVDSGFEHP SEGNSRGINV GHRLVAFFVI EKHFLVYDVV
101: LLLVSRTLQH ECIPQAILGM DVICQAKSGM GKTAVFVLST LQQIEPVAGQ VAALVLCHTR ELAYQICHEF ERFSTYLPDI KVAVFYGGVH IMKHKDILKN
201: ECPHIVVGTP GRILALARDK DLSLKNVRHF ILDECDKMLE SLDMRRDVQE IFKMTPHDKQ VMMFSATLSK EIRPVCKRFM QDPMEIYVDD EAKLTLHGLV
301: QHYIKLTELE KNRKLNDLLD ALDFNQVVIF VKSVSRAAEL NKLLVECNFP SICIHSGMSQ EERLTRYKNF KEGLKRILVA TDLVGRGIDI ERVNIVINYD
401: MPDSADTYLH RVGRAGRFGT KGLAITFVSS ASDSDVLNQV QERFEVDIKE LPEQIDTSTY MPS

Best Arabidopsis Sequence Match ( AT5G11200.3 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDGLRT LSGDSVALWW VGFGSGYCVF PRFHRARMGL NVPSNIDPME IYVDDEAKLT
301: LHGLVQHYIK LSEMEKNRKL NDLLDALDFN QVVIFVKSVS RAAELNKLLV ECNFPSICIH SGMSQEERLT RYKSFKEGHK RILVATDLVG RGIDIERVNI
401: VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVASASDSE VLNQVQERFE VDIKELPEQI DTSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.