CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61783	Soybean	cytosol	99.77	99.77
KRH47464	Soybean	nucleus	92.04	92.25
KRH44441	Soybean	cytosol, nucleus	92.04	92.25
KXG22711	Sorghum	cytosol	89.7	89.28
KXG32708	Sorghum	cytosol	88.76	88.55
TraesCS1B01G477500.1	Wheat	cytosol	88.76	87.94
TraesCS3B01G224400.1	Wheat	cytosol	87.59	87.38
TraesCS1A01G443400.1	Wheat	cytosol	88.76	87.33
TraesCS1D01G451300.1	Wheat	cytosol	86.42	87.23
TraesCS3D01G204400.1	Wheat	cytosol	87.35	87.15
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	87.82	86.81
Os01t0549700-01	Rice	cytosol, plastid	87.59	86.57
TraesCS3A01G200100.1	Wheat	cytosol	86.89	85.09
GSMUA_Achr8P05380_001	Banana	cytosol	91.8	84.67
HORVU1Hr1G095100.5	Barley	cytosol	87.12	79.32
Zm00001d009761_P004	Maize	cytosol	88.76	77.51
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	81.97	70.28
Zm00001d011149_P002	Maize	cytosol	24.59	63.25
Zm00001d011150_P005	Maize	cytosol	67.68	62.42
KRH52210	Soybean	cytosol, endoplasmic reticulum	35.13	36.32
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	34.89	36.08
KRH37426	Soybean	cytosol, endoplasmic reticulum	34.66	35.84
KRH10048	Soybean	cytosol, endoplasmic reticulum	34.66	35.84
KRH12430	Soybean	cytosol	34.66	35.84
KRH23270	Soybean	cytosol	34.66	35.84
KRH47074	Soybean	nucleus	34.43	35.59
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	34.43	35.59
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	34.19	35.35
KRH44102	Soybean	nucleus	34.66	35.15
KRH12197	Soybean	nucleus	31.38	33.0
KRH04755	Soybean	cytosol	20.37	32.83
KRH37217	Soybean	endoplasmic reticulum	31.15	32.68
KRH48170	Soybean	endoplasmic reticulum	35.13	29.82
KRH48173	Soybean	mitochondrion	34.89	29.8
KRH65096	Soybean	nucleus	34.66	29.66
KRH65098	Soybean	endoplasmic reticulum, nucleus	34.43	29.28
KRH40488	Soybean	cytosol	34.19	27.09
KRG99590	Soybean	endoplasmic reticulum, nucleus	30.45	26.64
KRG93607	Soybean	nucleus	29.74	25.66
KRH02098	Soybean	cytosol	11.71	21.74
KRH13813	Soybean	nucleus	26.0	19.75
KRH43643	Soybean	nucleus	25.76	19.57
KRH51049	Soybean	plastid	21.55	19.49

Protein Annotations

EntrezGene:100796232	MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	UniProt:A0A0R0JKX7	EMBL:ACUP02003419
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_06G069200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:KRH52452	ProteinID:KRH52452	ProteinID:KRH52452.1	ProteinID:KRH52453.1	ProteinID:KRH52454.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001B8373A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:5296290..5301641

Molecular Weight (calculated)

48278.2 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.261

Length

427 amino acids

Sequence
(BLAST)

001: MGETKDEAYE EELLDYEEED EKAPDSAGAK VNGEATKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIDP VPGQVSALVL CHTRELAYQI CHEFERFSTY LPDLKVAVFY GGVNIKVHKD LLKNECPHIV VGTPGRILAL TRDKDLSLKN VRHFILDECD
201: KMLESLDMRK DVQDIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL KEEEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELDKLLVE CNFPSICIHS GMSQEERLKR YKGFKEGHTR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVSCSTDVDV
401: LNNVQSRFEV DIKQLPEQID TSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.