CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02098	Soybean	cytosol	44.7	91.74
PGSC0003DMT400023224	Potato	nucleus	47.03	69.16
VIT_05s0020g02870.t01	Wine grape	extracellular	66.74	64.81
CDY02574	Canola	plastid	65.47	64.64
AT5G19210.2	Thale cress	plastid	64.19	64.19
CDY47205	Canola	plastid	64.83	64.02
Bra023712.1-P	Field mustard	plastid	64.41	63.6
KXG34209	Sorghum	plastid	58.69	62.53
Solyc01g079800.2.1	Tomato	plastid	60.81	62.53
Zm00001d011790_P001	Maize	plastid	57.84	61.07
Os01t0970600-01	Rice	plastid	58.69	58.44
TraesCS3B01G592900.1	Wheat	plastid	54.87	57.81
TraesCS3D01G530600.1	Wheat	plastid	54.66	57.46
GSMUA_Achr6P27990_001	Banana	plastid	58.9	57.32
HORVU3Hr1G114220.3	Barley	plastid	54.66	52.12
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	21.82	24.94
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	21.82	24.94
KRH10048	Soybean	cytosol, endoplasmic reticulum	21.61	24.7
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	21.61	24.7
KRH47074	Soybean	nucleus	21.61	24.7
KRH12430	Soybean	cytosol	21.61	24.7
KRH23270	Soybean	cytosol	21.61	24.7
KRH37426	Soybean	cytosol, endoplasmic reticulum	21.4	24.46
KRH44102	Soybean	nucleus	21.61	24.23
KRH52210	Soybean	cytosol, endoplasmic reticulum	21.19	24.21
KRH12197	Soybean	nucleus	19.92	23.15
KRH37217	Soybean	endoplasmic reticulum	19.92	23.1
KRH04755	Soybean	cytosol	12.71	22.64
KRH47464	Soybean	nucleus	19.49	21.6
KRH52452	Soybean	nucleus	19.49	21.55
KRH61783	Soybean	cytosol	19.49	21.55
KRH44441	Soybean	cytosol, nucleus	19.28	21.36
KRH13813	Soybean	nucleus	24.58	20.64
KRH43643	Soybean	nucleus	24.58	20.64
KRH65096	Soybean	nucleus	19.07	18.04
KRH48173	Soybean	mitochondrion	19.07	18.0
KRH65098	Soybean	endoplasmic reticulum, nucleus	19.07	17.93
KRH48170	Soybean	endoplasmic reticulum	19.07	17.89
KRG99590	Soybean	endoplasmic reticulum, nucleus	17.16	16.6
KRG93607	Soybean	nucleus	17.37	16.57
KRH40488	Soybean	cytosol	18.43	16.14

Protein Annotations

EntrezGene:100786205	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0JE29	EMBL:ACUP02004727	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_07G258400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH51049	ProteinID:KRH51049	ProteinID:KRH51049.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002338EE1	:

Description

hypothetical protein

Coordinates

chr7:+:43418489..43424204

Molecular Weight (calculated)

52717.0 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.061

Length

472 amino acids

Sequence
(BLAST)

001: MESNTLSLLS PLATLRVLSS EKLAPTNCYI LRSYNHFLKH FSSSTTNLKL GTPQAILNTS PIAPSEVTTP TLRELCQSHV PEHILQRMEE IGYVMPTDIQ
101: REALPYLFSG LDCILHAQTG SGKTLTYLLL IHSIINAAKS SVQALVLVPT RELGMQVTKV ARTLAAKPTG VDGEQKSCSI MALLDGGTLK RHKTWLKAEP
201: PTIVVATVGS LCQMLERHFF SLETVRVLIV DEVDCIFNSS KQVSSLRKIL TSYSSCNNRQ TVFASASIPQ HNRFIHDSVQ QKWTKRDVVH IHVSAVEPMP
301: SRLYHRFVIC DTKRKLHTLL SLIQSDAPES GIIFVAEQSE KSKKAGKAPS TSLLIDFLKT SYQGDLDILL LEDKMNFNSR AASLLEVRKG GGYLLVATDI
401: AARGFDLPEM SHIYNFDLPR TAIDYLHRAG RTCRKPFSDI NCTVTSIIVP DERFVLQRYE NELMFNCEEL VP

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.