CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12430	Soybean	cytosol	99.27	99.27
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	96.61	96.61
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	96.37	96.37
GSMUA_Achr8P24670_001	Banana	cytosol	86.44	94.95
GSMUA_Achr2P19480_001	Banana	cytosol	84.99	94.86
TraesCS6B01G144100.1	Wheat	cytosol	43.83	94.76
GSMUA_AchrUn_...	Banana	cytosol	84.75	94.59
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	94.43	94.43
EES04512	Sorghum	cytosol	93.46	94.15
Os06t0701100-02	Rice	extracellular, nucleus, plastid	94.19	93.96
KRH52210	Soybean	cytosol, endoplasmic reticulum	93.95	93.95
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	93.46	93.46
TraesCS7A01G419400.1	Wheat	cytosol	93.46	93.24
TraesCS7B01G320000.1	Wheat	cytosol	93.46	93.24
TraesCS7D01G412200.1	Wheat	golgi, nucleus	93.46	93.24
Zm00001d036480_P001	Maize	plasma membrane, plastid	93.46	93.24
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.22	93.22
KRH23270	Soybean	cytosol	93.22	93.22
Zm00001d015251_P001	Maize	extracellular	92.49	93.17
Os02t0146600-01	Rice	plastid	93.22	93.0
Zm00001d014673_P001	Maize	plastid	93.22	93.0
KRH47074	Soybean	nucleus	92.98	92.98
GSMUA_Achr10P...	Banana	cytosol	85.71	92.43
KRH44102	Soybean	nucleus	93.22	91.45
GSMUA_Achr7P19690_001	Banana	cytosol	77.97	91.22
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	94.19	88.01
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	94.19	88.01
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	85.47	80.78
HORVU6Hr1G020910.1	Barley	cytosol	93.95	76.83
OQU76995	Sorghum	cytosol	93.7	74.85
TraesCS6B01G144000.1	Wheat	golgi	94.19	70.6
KRH37217	Soybean	endoplasmic reticulum	62.23	63.15
KRH12197	Soybean	nucleus	61.99	63.05
KRH44441	Soybean	cytosol, nucleus	35.84	34.74
KRH47464	Soybean	nucleus	35.84	34.74
KRH04755	Soybean	cytosol	22.28	34.72
KRH52452	Soybean	nucleus	35.84	34.66
KRH61783	Soybean	cytosol	35.84	34.66
KRH48173	Soybean	mitochondrion	36.08	29.8
KRH65098	Soybean	endoplasmic reticulum, nucleus	36.08	29.68
KRH65096	Soybean	nucleus	35.84	29.66
KRH48170	Soybean	endoplasmic reticulum	36.08	29.62
KRG99590	Soybean	endoplasmic reticulum, nucleus	33.9	28.69
KRG93607	Soybean	nucleus	33.66	28.08
KRH40488	Soybean	cytosol	36.08	27.64
KRH02098	Soybean	cytosol	12.35	22.17
KRH51049	Soybean	plastid	24.46	21.4
KRH13813	Soybean	nucleus	27.84	20.46
KRH43643	Soybean	nucleus	27.84	20.46

Protein Annotations

EntrezGene:100788218	MapMan:17.4.2.1	Gene3D:3.40.50.300	EMBL:ACUP02005446	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_09G065600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006413	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1L1K7	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH37426	ProteinID:KRH37426	ProteinID:KRH37426.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002337B91	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:6395480..6398868

Molecular Weight (calculated)

46859.4 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.243

Length

413 amino acids

Sequence
(BLAST)

001: MAGIAPEGSQ FDARQYDTKM NELLTSDGQD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYSVTECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLRP DYIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFHVNV EKEEWKLDTL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDEKM LFDIQKFYNV
401: VIEELPSNVA ELL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.