Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G320000.1 | Wheat | cytosol | 98.43 | 45.41 |
| Os06t0701100-02 | Rice | extracellular, nucleus, plastid | 97.38 | 44.93 |
| VIT_11s0016g01920.t01 | Wine grape | cytosol | 94.76 | 43.83 |
| Solyc06g062800.2.1 | Tomato | cytosol, nucleus, unclear | 94.76 | 43.83 |
| KRH12430 | Soybean | cytosol | 94.76 | 43.83 |
| PGSC0003DMT400012518 | Potato | cytosol | 94.76 | 43.83 |
| KRH37426 | Soybean | cytosol, endoplasmic reticulum | 94.76 | 43.83 |
| VIT_04s0008g01000.t01 | Wine grape | cytosol, extracellular | 94.24 | 43.58 |
| KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 93.72 | 43.34 |
| GSMUA_Achr6P01750_001 | Banana | cytosol, plasma membrane | 92.67 | 42.86 |
| KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.67 | 42.86 |
| KRH47074 | Soybean | nucleus | 92.15 | 42.62 |
| KRH23270 | Soybean | cytosol | 92.15 | 42.62 |
| KRH10048 | Soybean | cytosol, endoplasmic reticulum | 92.15 | 42.62 |
| KRH44102 | Soybean | nucleus | 92.67 | 42.04 |
| VIT_09s0002g01760.t01 | Wine grape | cytosol | 94.76 | 41.51 |
| GSMUA_Achr8P24670_001 | Banana | cytosol | 75.92 | 38.56 |
| GSMUA_Achr10P... | Banana | cytosol | 75.39 | 37.6 |
| TraesCS6B01G144000.1 | Wheat | golgi | 98.43 | 34.12 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 71.2 | 33.42 |
| GSMUA_Achr7P19690_001 | Banana | cytosol | 61.26 | 33.14 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 70.68 | 32.77 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 57.07 | 25.89 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 37.17 | 16.47 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 36.65 | 16.36 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 38.22 | 14.63 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 38.22 | 14.43 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 36.13 | 14.32 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 38.74 | 14.15 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 36.65 | 13.33 |
| TraesCS3B01G592900.1 | Wheat | plastid | 26.7 | 11.38 |
| TraesCS6B01G262800.1 | Wheat | mitochondrion | 27.75 | 8.82 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 55.5 | 7.94 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G144100.1 | EnsemblPlantsGene:TraesCS6B01G144100 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF365 | PFAM:PF00271 | PFscan:PS51194 | SMART:SM00490 | SUPFAM:SSF52540 |
| TIGR:cd00079 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:143605307..143605882
Molecular Weight (calculated)
22286.0 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.305
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPEALEITR KFMNKPVRIL VKRDELTLEG IKQFYVNVEK EEWKLDTLCD LYETLAITQS VIFVNTRRKV DWLSDKMRGR DHIVSATHGD MDQNTRDIIM
101: REFRSGSSRV LITTDLLARG IDVQQVSLVI NYDLPIQPEN YLHRIGRSGR FGRKGVAINF VTREDERMLF DIQKFYNVVI EELPANVADL L
101: REFRSGSSRV LITTDLLARG IDVQQVSLVI NYDLPIQPEN YLHRIGRSGR FGRKGVAINF VTREDERMLF DIQKFYNVVI EELPANVADL L
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGFEKPSAI QQRGIVPFCK GLDVIQQAQS GTGKTATFCS GVLQQLDYAL
101: LQCQALVLAP TRELAQQIEK VMRALGDYQG VKVHACVGGT SVREDQRILQ AGVHVVVGTP GRVFDMLRRQ SLRPDCIKMF VLDEADEMLS RGFKDQIYDI
201: FQLLPPKIQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVEKEDWK LETLCDLYET LAITQSVIFV NTRRKVDWLT DKMRSRDHTV
301: SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFVTLD DQRMLFDIQK FYNVVVEELP
401: SNVADLL
101: LQCQALVLAP TRELAQQIEK VMRALGDYQG VKVHACVGGT SVREDQRILQ AGVHVVVGTP GRVFDMLRRQ SLRPDCIKMF VLDEADEMLS RGFKDQIYDI
201: FQLLPPKIQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVEKEDWK LETLCDLYET LAITQSVIFV NTRRKVDWLT DKMRSRDHTV
301: SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFVTLD DQRMLFDIQK FYNVVVEELP
401: SNVADLL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.