Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G354900.1 | |
| TraesCS2B01G373600.1 | |
| TraesCS2D01G353600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | TraesCS2A01G354900.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2B01G373600.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2D01G353600.1 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G186800.1 | Wheat | cytosol | 91.46 | 95.84 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 94.68 | 94.05 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 26.59 | 84.32 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 39.7 | 82.81 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 5.47 | 59.35 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 17.45 | 59.14 |
| PGSC0003DMT400075339 | Potato | cytosol | 17.98 | 58.11 |
| Solyc12g095990.1.1 | Tomato | nucleus | 17.98 | 58.11 |
| TraesCS7B01G320000.1 | Wheat | cytosol | 17.98 | 57.97 |
| Solyc07g040750.1.1 | Tomato | cytosol | 17.83 | 57.63 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 17.83 | 57.63 |
| PGSC0003DMT400075336 | Potato | cytosol | 17.68 | 57.56 |
| PGSC0003DMT400021166 | Potato | cytosol | 17.75 | 57.38 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 17.75 | 57.38 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 17.68 | 57.14 |
| Bra021517.1-P | Field mustard | cytosol | 17.53 | 56.8 |
| CDY39079 | Canola | cytosol | 17.53 | 56.8 |
| Bra027387.1-P | Field mustard | cytosol | 17.45 | 56.55 |
| CDY08220 | Canola | cytosol | 17.38 | 56.31 |
| Bra014365.1-P | Field mustard | cytosol | 17.38 | 56.31 |
| AT1G54270.1 | Thale cress | cytosol | 17.3 | 56.07 |
| CDY10607 | Canola | cytosol | 17.23 | 55.96 |
| CDY02469 | Canola | cytosol | 17.23 | 55.83 |
| Bra030893.1-P | Field mustard | cytosol | 17.23 | 55.83 |
| CDY32586 | Canola | cytosol | 15.81 | 55.82 |
| Bra001530.1-P | Field mustard | cytosol | 17.38 | 55.77 |
| TraesCS6B01G144100.1 | Wheat | cytosol | 7.94 | 55.5 |
| Os02t0221300-01 | Rice | cytosol | 36.55 | 55.39 |
| Bra029124.1-P | Field mustard | cytosol | 16.93 | 55.12 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 3.45 | 54.76 |
| Bra037977.1-P | Field mustard | cytosol | 16.85 | 54.61 |
| CDY67069 | Canola | cytosol | 4.12 | 54.46 |
| CDY24057 | Canola | cytosol | 16.78 | 54.37 |
| AT1G72730.1 | Thale cress | cytosol | 16.85 | 54.35 |
| CDY33073 | Canola | cytosol | 16.63 | 53.88 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.15 | 53.63 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.15 | 53.63 |
| CDY72259 | Canola | cytosol | 8.84 | 53.15 |
| OQU84655 | Sorghum | cytosol | 30.26 | 52.81 |
| AT3G13920.5 | Thale cress | cytosol | 16.55 | 52.74 |
| CDY55205 | Canola | cytosol | 16.63 | 52.48 |
| CDX97528 | Canola | cytosol | 16.55 | 52.0 |
| CDX82505 | Canola | cytosol | 16.4 | 51.17 |
| CDX75739 | Canola | cytosol | 16.48 | 50.46 |
| CDY11154 | Canola | cytosol | 7.27 | 48.02 |
| Zm00001d016351_P002 | Maize | nucleus | 31.09 | 46.52 |
| KXG29825 | Sorghum | cytosol | 29.81 | 45.12 |
| TraesCS6B01G144000.1 | Wheat | golgi | 18.5 | 44.83 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 13.18 | 43.24 |
| CDY54037 | Canola | cytosol | 8.54 | 42.7 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 12.81 | 41.5 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 9.51 | 41.37 |
| CDY53867 | Canola | cytosol | 12.66 | 40.05 |
| CDX72939 | Canola | mitochondrion, nucleus | 12.58 | 36.05 |
| Zm00001d016350_P001 | Maize | vacuole | 12.81 | 33.93 |
| Bra016037.1-P | Field mustard | cytosol | 18.05 | 33.15 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 9.36 | 29.21 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 9.21 | 28.54 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 9.66 | 25.85 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 9.96 | 25.43 |
| CDY68148 | Canola | nucleus | 13.86 | 25.03 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 9.59 | 24.38 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 8.54 | 22.53 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 7.34 | 20.33 |
| TraesCS3B01G592900.1 | Wheat | plastid | 6.82 | 20.31 |
| TraesCS6B01G262800.1 | Wheat | mitochondrion | 6.97 | 15.47 |
| CDY49860 | Canola | cytosol | 0.97 | 10.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4283 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF14111 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G217700 |
| EnsemblPlants:TraesCS6B01G217700.1 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6B:-:299602397..299622053
Molecular Weight (calculated)
147459.0 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.474
Length
1335 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCNSRENKT APEQELTTLP GKKKCFACKE TSHNLGQCRI KDKLGTAARL FGHYTRFPFY MIQPSKEVVE NEKFYHHCLL ITSNTCNLDP AVVKIELNKF
0101: WKLTDGWYIK REGRQNFVAS FNSEEDLLSC LNPPNVETFL DEKEVNFTVA RWDEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFAFGW SSRLVKFMIE DKARRIEGQW KEVEERKVCV MKEYADIREG IEVPPETLDK GMDLEGTGID FAGNYSLDFG
0301: SCSRKECKEE LKTTERNGNI MKEYADIREQ GIEVPAETLN EGMDLEGTGV DFTGNYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLEGTG VDFTGNYSLD FRSCSGKECK EELKTTEGNG SIMMEYAAIR EEGIEVRPET LNEGMDLEGI GVDFAGNYSL DLGSCPGKEC KEELKTTEGN
0501: GSVMKEYADI REEGIEVPLE TLNKGMDLEG TGVDFAGNYS LDLGSCLGKE CKEEPKTTET VTLLEVAKFI PELRADEEIK ENSGSAIAAT TTNSKKAAEG
0601: GQSPSESSAR GDHMSGLEDC SDKKHQKKLM TCDMATILQV SKFTEEFKTD GEIKENNASA IGGTRTNSEG ATVDIPKATE DMATLLQASK FTEELRTDRE
0701: IKENNASAIL GTRMNSERAT EDIPKATEDM ATLLQVSKFT EELRTNGEIK ENNASAIVDT RTNSGRATED VPKAEGGQSI SGSSTSTSLI EEVFRGHKPS
0801: IKNVYTRRDR KQKKSAEGST LCANISSDSA HEGLQKPPIK NMYEGSDPKQ KGSTVGQLAS KELNRGMNPG SSSHATRIAT STCNMMDSES LLEKEHEKEM
0901: KMAETAAKTV GAEGAQSIKG SSVCMLRVTQ TKEGAWFDGK QPVSKITTRL TQFYEEFNTY NEIYDSFVEM GLQENLLKGI YAYGLEKPSL VHQRGIVPLC
1001: KGLDVIQQSL SGTTVTLACG VLQRLDYGSM ECQALVLVPT RDLAQETEKV IGALGQWLSV KAHACLGGTS VREHKQILSS STQVIVATPS RALDMLRTRA
1101: LCPDNVRMLV LDEADEILAG GLKNQIYDII QLLPAKIQFG VFSTTMSNEA LELCRKCMNK PMKVIVPKDE ELEGFTVKQF HVKAEDEELK FEKLCDLFDT
1201: MVVTQNIIFV NARRKVESLA EKISGRGYTV SASHGGMDQH ARDVAVQDLR SGSSRVLVTT DIRGANAVQV PVVINYDLPT QPVQYLRHVR RSGQPGGIGV
1301: AISFVARADE RVLSDIQRFC NTQLAKLPSD VADLL
0101: WKLTDGWYIK REGRQNFVAS FNSEEDLLSC LNPPNVETFL DEKEVNFTVA RWDEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFAFGW SSRLVKFMIE DKARRIEGQW KEVEERKVCV MKEYADIREG IEVPPETLDK GMDLEGTGID FAGNYSLDFG
0301: SCSRKECKEE LKTTERNGNI MKEYADIREQ GIEVPAETLN EGMDLEGTGV DFTGNYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLEGTG VDFTGNYSLD FRSCSGKECK EELKTTEGNG SIMMEYAAIR EEGIEVRPET LNEGMDLEGI GVDFAGNYSL DLGSCPGKEC KEELKTTEGN
0501: GSVMKEYADI REEGIEVPLE TLNKGMDLEG TGVDFAGNYS LDLGSCLGKE CKEEPKTTET VTLLEVAKFI PELRADEEIK ENSGSAIAAT TTNSKKAAEG
0601: GQSPSESSAR GDHMSGLEDC SDKKHQKKLM TCDMATILQV SKFTEEFKTD GEIKENNASA IGGTRTNSEG ATVDIPKATE DMATLLQASK FTEELRTDRE
0701: IKENNASAIL GTRMNSERAT EDIPKATEDM ATLLQVSKFT EELRTNGEIK ENNASAIVDT RTNSGRATED VPKAEGGQSI SGSSTSTSLI EEVFRGHKPS
0801: IKNVYTRRDR KQKKSAEGST LCANISSDSA HEGLQKPPIK NMYEGSDPKQ KGSTVGQLAS KELNRGMNPG SSSHATRIAT STCNMMDSES LLEKEHEKEM
0901: KMAETAAKTV GAEGAQSIKG SSVCMLRVTQ TKEGAWFDGK QPVSKITTRL TQFYEEFNTY NEIYDSFVEM GLQENLLKGI YAYGLEKPSL VHQRGIVPLC
1001: KGLDVIQQSL SGTTVTLACG VLQRLDYGSM ECQALVLVPT RDLAQETEKV IGALGQWLSV KAHACLGGTS VREHKQILSS STQVIVATPS RALDMLRTRA
1101: LCPDNVRMLV LDEADEILAG GLKNQIYDII QLLPAKIQFG VFSTTMSNEA LELCRKCMNK PMKVIVPKDE ELEGFTVKQF HVKAEDEELK FEKLCDLFDT
1201: MVVTQNIIFV NARRKVESLA EKISGRGYTV SASHGGMDQH ARDVAVQDLR SGSSRVLVTT DIRGANAVQV PVVINYDLPT QPVQYLRHVR RSGQPGGIGV
1301: AISFVARADE RVLSDIQRFC NTQLAKLPSD VADLL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.