Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 95.89 | 92.97 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 95.89 | 92.97 |
| AT1G54270.1 | Thale cress | cytosol | 88.65 | 89.08 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 88.65 | 88.86 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 87.92 | 88.14 |
| Solyc07g040750.1.1 | Tomato | cytosol | 85.02 | 85.23 |
| AT3G13920.5 | Thale cress | cytosol | 85.75 | 84.73 |
| AT3G19760.1 | Thale cress | cytosol | 59.18 | 60.05 |
| AT1G51380.1 | Thale cress | cytosol | 53.86 | 56.89 |
| Bra016037.1-P | Field mustard | cytosol | 95.17 | 54.2 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 52.9 | 52.02 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 35.51 | 47.88 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 54.59 | 41.09 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 53.62 | 34.69 |
| AT5G11170.1 | Thale cress | cytosol | 35.51 | 34.43 |
| AT3G61240.1 | Thale cress | cytosol | 37.44 | 31.12 |
| AT5G11200.2 | Thale cress | cytosol | 35.51 | 30.25 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 35.99 | 29.5 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 36.72 | 28.79 |
| AT3G53110.1 | Thale cress | cytosol | 33.82 | 28.23 |
| OQU84655 | Sorghum | cytosol | 48.79 | 26.41 |
| Os02t0221300-01 | Rice | cytosol | 53.38 | 25.09 |
| Zm00001d016350_P001 | Maize | vacuole | 28.26 | 23.21 |
| AT5G19210.2 | Thale cress | plastid | 25.6 | 22.46 |
| KXG29825 | Sorghum | cytosol | 45.89 | 21.54 |
| Zm00001d016351_P002 | Maize | nucleus | 46.14 | 21.41 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 27.05 | 20.33 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 55.56 | 18.05 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 55.8 | 17.19 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 54.35 | 16.85 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | EntrezGene:843605 | UniProt:A0A178WL55 | ProteinID:AAG51861.1 | ProteinID:AEE35365.1 |
| EMBL:AJ010472 | ArrayExpress:AT1G72730 | EnsemblPlantsGene:AT1G72730 | RefSeq:AT1G72730 | TAIR:AT1G72730 | RefSeq:AT1G72730-TAIR-G |
| EnsemblPlants:AT1G72730.1 | TAIR:AT1G72730.1 | EMBL:AY060592 | EMBL:AY088176 | EMBL:AY142066 | Unigene:At.22983 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009505 | GO:GO:0009987 |
| GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030312 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_177417.1 |
| ProteinID:OAP18894.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005020 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | UniProt:Q9CAI7 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000A46FF | : | : |
Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
Coordinates
chr1:-:27377759..27380182
Molecular Weight (calculated)
46773.3 Da
IEP (calculated)
4.932
GRAVY (calculated)
-0.221
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.