Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003147_P001 | |
| Zm00001d025777_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | Zm00001d003147_P001 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | Zm00001d025777_P007 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29825 | Sorghum | cytosol | 74.78 | 75.62 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 24.33 | 51.54 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 7.06 | 51.22 |
| Zm00001d015251_P001 | Maize | extracellular | 22.98 | 50.0 |
| Solyc12g095990.1.1 | Tomato | nucleus | 23.09 | 49.88 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 21.97 | 49.75 |
| PGSC0003DMT400075339 | Potato | cytosol | 22.98 | 49.64 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 22.76 | 49.03 |
| Zm00001d014673_P001 | Maize | plastid | 22.76 | 49.03 |
| PGSC0003DMT400075336 | Potato | cytosol | 22.53 | 49.02 |
| PGSC0003DMT400021166 | Potato | cytosol | 22.65 | 48.91 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 22.65 | 48.91 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 22.65 | 48.91 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 4.6 | 48.81 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 22.53 | 48.67 |
| Solyc07g040750.1.1 | Tomato | cytosol | 22.53 | 48.67 |
| Bra027387.1-P | Field mustard | cytosol | 22.42 | 48.54 |
| Bra021517.1-P | Field mustard | cytosol | 22.42 | 48.54 |
| CDY39079 | Canola | cytosol | 22.42 | 48.54 |
| AT1G54270.1 | Thale cress | cytosol | 22.2 | 48.06 |
| Bra001530.1-P | Field mustard | cytosol | 22.31 | 47.84 |
| CDY08220 | Canola | cytosol | 22.09 | 47.82 |
| CDY10607 | Canola | cytosol | 21.97 | 47.69 |
| CDY02469 | Canola | cytosol | 21.97 | 47.57 |
| Bra030893.1-P | Field mustard | cytosol | 21.97 | 47.57 |
| Bra014365.1-P | Field mustard | cytosol | 21.97 | 47.57 |
| CDY72259 | Canola | cytosol | 11.77 | 47.3 |
| CDY24057 | Canola | cytosol | 21.75 | 47.09 |
| Bra037977.1-P | Field mustard | cytosol | 21.75 | 47.09 |
| Bra029124.1-P | Field mustard | cytosol | 21.41 | 46.59 |
| CDY55205 | Canola | cytosol | 22.09 | 46.57 |
| CDY32586 | Canola | cytosol | 19.73 | 46.56 |
| CDY33073 | Canola | cytosol | 21.41 | 46.36 |
| AT1G72730.1 | Thale cress | cytosol | 21.41 | 46.14 |
| CDX97528 | Canola | cytosol | 21.97 | 46.12 |
| AT3G13920.5 | Thale cress | cytosol | 21.64 | 46.06 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 28.14 | 45.64 |
| CDX82505 | Canola | cytosol | 21.75 | 45.33 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.64 | 45.2 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.64 | 45.2 |
| CDX75739 | Canola | cytosol | 21.86 | 44.72 |
| CDY67069 | Canola | cytosol | 5.04 | 44.55 |
| CDY11154 | Canola | cytosol | 10.09 | 44.55 |
| Zm00001d016350_P001 | Maize | vacuole | 24.78 | 43.85 |
| Os02t0221300-01 | Rice | cytosol | 42.94 | 43.47 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 29.15 | 40.62 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 18.27 | 40.05 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 12.89 | 37.46 |
| Zm00001d018542_P006 | Maize | cytosol | 18.16 | 36.57 |
| CDY54037 | Canola | cytosol | 10.87 | 36.33 |
| CDY53867 | Canola | cytosol | 16.48 | 34.83 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 46.3 | 32.42 |
| CDX72939 | Canola | mitochondrion, nucleus | 16.26 | 31.12 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 46.52 | 31.09 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 46.75 | 31.03 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 10.99 | 28.82 |
| Bra016037.1-P | Field mustard | cytosol | 22.98 | 28.2 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 14.13 | 25.05 |
| Zm00001d017384_P008 | Maize | cytosol | 14.35 | 24.38 |
| Zm00001d051268_P004 | Maize | extracellular | 14.13 | 24.14 |
| Zm00001d009761_P004 | Maize | cytosol | 12.44 | 22.7 |
| CDY68148 | Canola | nucleus | 18.05 | 21.79 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 11.88 | 21.03 |
| Zm00001d011150_P005 | Maize | cytosol | 10.54 | 20.3 |
| Zm00001d011149_P002 | Maize | cytosol | 3.48 | 18.67 |
| Zm00001d011790_P001 | Maize | plastid | 7.74 | 15.44 |
| Zm00001d017345_P002 | Maize | plastid | 10.54 | 14.8 |
| CDY49860 | Canola | cytosol | 1.01 | 7.2 |
Protein Annotations
| EntrezGene:103627096 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6H6W8 | ProteinID:AQK70531.1 | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DUF4283 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF14111 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF534 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0002219C67 |
| EnsemblPlantsGene:Zm00001d016351 | EnsemblPlants:Zm00001d016351_P002 | EnsemblPlants:Zm00001d016351_T002 | SEG:seg | : | : |
Description
GRMZM2G028366Eukaryotic initiation factor 4A-2
Coordinates
chr5:-:158826371..158834671
Molecular Weight (calculated)
98808.9 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.435
Length
892 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQREGMHL VSEMTDARVS SQVVEDRGTE KTMPEEQLSV TLSDGKGCFA CNERSHNLEQ CKTKYKLVPA AHQFGYATKF PFTVIQPSNE MVEKKKFFQH
101: CLLIESNLAN LDESMLKDEL KKLWNLPGDW ELRRECSTTF LASFSSEDDL TSCLKNPEIQ TLLDNKEVKL TVTRWNESDD GSPGLVEEWL LVSGVPRMYR
201: NWKELYEVAS ALGVLIDVDE ESLQVGDKEP IRLKLKTAFR SFDAAPFSYY FAFGCWSSRL VMVTAVQDKT QGMEHKIKEL DCKEHKKELN VAKSIMLEEP
301: NSTEESRSNG KAKVNKISAP AATITDSEVI AAIESSKPEG VQSIAQSPRS MTGEENFRGI QKPPIKHVFK RRGKKQPVTT EAINKSPSNK MDKEVAPHSQ
401: SNATRTGAST GCDMLDQKEC SKMEPKRELN MEGITPAGES KKAEKIGACR NSEYSKVASS TIKSKKTQIL GDTSRAPRDE LITKYPKGDG MDQMGSSAQG
501: DEKEDASIID TGLLPNSEEV GVYDSFSEMG LQENLLKGIY QYGLEKPSAV HQRGIVPLCK GFDVLHRSLS GTTETICSGV LQRVDYGSAE CQALILVPTP
601: DLAQETLKVL EALGEFLGVT AQTCTGGTSA HADQQALLSG AQVLVGTPDC ILDMLQKHAV CPDHVRMLFL DEADELLTGG SKDQIYKIIV HLPDKIQVGL
701: FSATYSTEAI ESSRRLMDKP VAVIVPRDEE LKNVKQYYLA VENEGLKLRK LLALFKTTGT EQLVIFANTR DKVLSLAEDV GKRYAVSASH DGMDQRARDA
801: AVQKFRSGSS SILIATDHGG TTNAMPQVPI IINYDLPTES MRYVRRLQQQ NRQFRRSVSV AISFVTPADR RTLSAITSFC KCYMGELPTD LK
101: CLLIESNLAN LDESMLKDEL KKLWNLPGDW ELRRECSTTF LASFSSEDDL TSCLKNPEIQ TLLDNKEVKL TVTRWNESDD GSPGLVEEWL LVSGVPRMYR
201: NWKELYEVAS ALGVLIDVDE ESLQVGDKEP IRLKLKTAFR SFDAAPFSYY FAFGCWSSRL VMVTAVQDKT QGMEHKIKEL DCKEHKKELN VAKSIMLEEP
301: NSTEESRSNG KAKVNKISAP AATITDSEVI AAIESSKPEG VQSIAQSPRS MTGEENFRGI QKPPIKHVFK RRGKKQPVTT EAINKSPSNK MDKEVAPHSQ
401: SNATRTGAST GCDMLDQKEC SKMEPKRELN MEGITPAGES KKAEKIGACR NSEYSKVASS TIKSKKTQIL GDTSRAPRDE LITKYPKGDG MDQMGSSAQG
501: DEKEDASIID TGLLPNSEEV GVYDSFSEMG LQENLLKGIY QYGLEKPSAV HQRGIVPLCK GFDVLHRSLS GTTETICSGV LQRVDYGSAE CQALILVPTP
601: DLAQETLKVL EALGEFLGVT AQTCTGGTSA HADQQALLSG AQVLVGTPDC ILDMLQKHAV CPDHVRMLFL DEADELLTGG SKDQIYKIIV HLPDKIQVGL
701: FSATYSTEAI ESSRRLMDKP VAVIVPRDEE LKNVKQYYLA VENEGLKLRK LLALFKTTGT EQLVIFANTR DKVLSLAEDV GKRYAVSASH DGMDQRARDA
801: AVQKFRSGSS SILIATDHGG TTNAMPQVPI IINYDLPTES MRYVRRLQQQ NRQFRRSVSV AISFVTPADR RTLSAITSFC KCYMGELPTD LK
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.