Factsheet for Zm00001d014673_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036480_P001	Maize	plasma membrane, plastid	99.52	99.52
Os02t0146600-01	Rice	plastid	97.34	97.34
Zm00001d015251_P001	Maize	extracellular	95.41	96.34
GSMUA_Achr8P24670_001	Banana	cytosol	85.99	94.68
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	94.44	94.67
VIT_11s0016g01920.t01	Wine grape	cytosol	94.2	94.43
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.24	93.46
KRH12430	Soybean	cytosol	93.24	93.46
KRH23270	Soybean	cytosol	93.24	93.46
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	93.0	93.22
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.0	93.22
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	92.75	92.98
KRH47074	Soybean	nucleus	92.51	92.74
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	92.51	92.74
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	91.79	92.01
PGSC0003DMT400012518	Potato	cytosol	91.3	91.53
KRH44102	Soybean	nucleus	92.75	91.21
GSMUA_Achr10P...	Banana	cytosol	84.3	91.12
GSMUA_Achr7P19690_001	Banana	cytosol	77.05	90.37
VIT_09s0002g01760.t01	Wine grape	cytosol	92.75	88.07
OQU76995	Sorghum	cytosol	99.28	79.5
Zm00001d051840_P003	Maize	extracellular, mitochondrion	62.56	63.64
Zm00001d018542_P006	Maize	cytosol	62.08	58.01
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	28.99	35.29
Zm00001d009761_P004	Maize	cytosol	36.72	31.08
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	36.72	30.22
Zm00001d017384_P008	Maize	cytosol	37.44	29.52
Zm00001d051268_P004	Maize	extracellular	37.2	29.5
Zm00001d011149_P002	Maize	cytosol	11.11	27.71
Zm00001d027728_P001	Maize	extracellular, plasma membrane	32.37	26.59
Zm00001d016350_P001	Maize	vacuole	29.47	24.21
Zm00001d011150_P005	Maize	cytosol	25.6	22.89
Zm00001d016351_P002	Maize	nucleus	49.03	22.76
Zm00001d011790_P001	Maize	plastid	23.43	21.7
Zm00001d017345_P002	Maize	plastid	26.57	17.32

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	ProteinID:AQK66783.1	EMBL:BT067712	UniProt:C0PHE3	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000195CCA4	EnsemblPlantsGene:Zm00001d014673	EnsemblPlants:Zm00001d014673_P001	EnsemblPlants:Zm00001d014673_T001	:

Description

eucaryotic initiation factor4 eucaryotic initiation factor4

Coordinates

chr5:-:58592104..58595583

Molecular Weight (calculated)

46955.5 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.230

Length

414 amino acids

Sequence
(BLAST)

001: MAGMAPEGSQ FDAKHYDSKM QELLSTGETE EFFTSYDEVF ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYGLVEC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILGSGV HVVVGTPGRV FDMLRRQSLR PDNIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPAKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEDWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTRDDER MLFDIQKFYN
401: VLIEELPANV ADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.