Factsheet for Solyc06g062800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012518	Potato	cytosol	99.52	99.52
TraesCS6B01G144100.1	Wheat	cytosol	43.83	94.76
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	89.59	93.91
Solyc08g062800.2.1	Tomato	extracellular, plastid	93.46	93.46
Solyc12g095990.1.1	Tomato	nucleus	93.46	93.46
GSMUA_Achr8P24670_001	Banana	cytosol	84.99	93.35
VIT_11s0016g01920.t01	Wine grape	cytosol	93.22	93.22
KRH23270	Soybean	cytosol	93.22	93.22
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.22	93.22
KRH47074	Soybean	nucleus	92.98	92.98
GSMUA_Achr2P19480_001	Banana	cytosol	83.05	92.7
EES04512	Sorghum	cytosol	91.53	92.2
Zm00001d036480_P001	Maize	plasma membrane, plastid	92.25	92.03
Zm00001d014673_P001	Maize	plastid	92.01	91.79
TraesCS7D01G412200.1	Wheat	golgi, nucleus	92.01	91.79
TraesCS7B01G320000.1	Wheat	cytosol	92.01	91.79
TraesCS7A01G419400.1	Wheat	cytosol	92.01	91.79
Zm00001d015251_P001	Maize	extracellular	91.04	91.71
GSMUA_AchrUn_...	Banana	cytosol	82.08	91.62
Os02t0146600-01	Rice	plastid	91.77	91.55
KRH44102	Soybean	nucleus	93.22	91.45
Os06t0701100-02	Rice	extracellular, nucleus, plastid	91.53	91.3
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	90.8	90.8
GSMUA_Achr10P...	Banana	cytosol	83.54	90.08
GSMUA_Achr7P19690_001	Banana	cytosol	76.27	89.24
VIT_09s0002g01760.t01	Wine grape	cytosol	94.19	89.22
Solyc07g040750.1.1	Tomato	cytosol	87.41	87.41
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	92.01	85.97
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	92.01	85.97
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	82.81	78.26
HORVU6Hr1G020910.1	Barley	cytosol	91.77	75.05
OQU76995	Sorghum	cytosol	92.25	73.69
TraesCS6B01G144000.1	Wheat	golgi	92.01	68.97
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	59.08	62.4
Solyc06g066060.2.1	Tomato	nucleus	35.59	35.85
Solyc10g017530.2.1	Tomato	nucleus	37.05	31.16
Solyc08g061000.2.1	Tomato	nucleus	35.59	30.31
Solyc01g094350.2.1	Tomato	nucleus	36.08	29.92
Solyc05g048850.2.1	Tomato	mitochondrion	36.32	27.93
Solyc10g085790.1.1	Tomato	nucleus	33.66	27.36
Solyc04g082790.2.1	Tomato	plastid	32.93	27.25
Solyc01g079800.2.1	Tomato	plastid	24.94	22.44
Solyc08g080550.1.1	Tomato	nucleus	27.6	20.8

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006413	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4C711	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g062800.2	EnsemblPlants:Solyc06g062800.2.1	UniParc:UPI0002766959	:	:	:

Description

No Description!

Coordinates

chr6:-:39623259..39626299

Molecular Weight (calculated)

46830.5 Da

IEP (calculated)

5.549

GRAVY (calculated)

-0.196

Length

413 amino acids

Sequence
(BLAST)

001: MARLAPEGAQ FDARQFDSKM NDLLAAEGKD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLIQCQ SLVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILAAGVH VVVGTPGRVF DMLRRQSLRP DCLRMFVLDE ADEMLSRGFK
201: DQIYDIFQML PTKVQVGVFS ATMPPEALDI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTTDDERM LFDIQKFYNV
401: VIEELPSNVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.