Factsheet for Solyc10g085790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022137	Potato	nucleus	98.62	97.47
Solyc04g082790.2.1	Tomato	plastid	95.47	97.19
VIT_00s2262g00010.t01	Wine grape	cytosol	38.19	79.51
VIT_08s0007g04400.t01	Wine grape	cytosol	67.91	67.25
GSMUA_Achr10P...	Banana	nucleus	63.58	67.01
KRG99590	Soybean	endoplasmic reticulum, nucleus	61.02	63.52
CDX67556	Canola	cytosol	58.86	63.35
KRG93607	Soybean	nucleus	61.42	63.03
CDY13319	Canola	cytosol	60.63	62.86
GSMUA_Achr6P14220_001	Banana	cytosol	64.37	62.52
VIT_08s0007g04430.t01	Wine grape	cytosol	38.19	62.38
Bra028547.1-P	Field mustard	cytosol	60.24	62.32
CDX95397	Canola	cytosol	60.04	61.74
CDX76225	Canola	cytosol	59.84	61.29
Bra040687.1-P	Field mustard	cytosol	59.84	61.29
AT3G53110.1	Thale cress	cytosol	59.65	61.09
TraesCS5D01G532700.1	Wheat	cytosol	56.3	59.96
TraesCS4A01G340500.1	Wheat	cytosol	56.3	59.83
TraesCSU01G076700.1	Wheat	cytosol	56.1	59.75
EER95473	Sorghum	cytosol	58.66	59.72
TraesCS5B01G534600.1	Wheat	cytosol	56.5	59.54
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	58.46	58.7
TraesCS4B01G274200.1	Wheat	cytosol	58.46	58.7
Zm00001d027728_P001	Maize	extracellular, plasma membrane	58.07	58.53
TraesCS4D01G272900.1	Wheat	cytosol	58.27	58.27
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	57.87	58.22
TraesCS4A01G031800.1	Wheat	cytosol	58.07	58.07
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	26.38	34.01
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	25.98	33.76
Solyc12g095990.1.1	Tomato	nucleus	27.36	33.66
Solyc08g062800.2.1	Tomato	extracellular, plastid	27.36	33.66
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	27.36	33.66
Solyc07g040750.1.1	Tomato	cytosol	26.77	32.93
Solyc06g066060.2.1	Tomato	nucleus	23.82	29.51
Solyc10g017530.2.1	Tomato	nucleus	26.97	27.9
Solyc01g094350.2.1	Tomato	nucleus	25.79	26.31
Solyc08g061000.2.1	Tomato	nucleus	24.02	25.15
Solyc05g048850.2.1	Tomato	mitochondrion	26.18	24.77
Solyc08g080550.1.1	Tomato	nucleus	21.65	20.07
Solyc01g079800.2.1	Tomato	plastid	16.34	18.08

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4D413	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g085790.1	EnsemblPlants:Solyc10g085790.1.1
UniParc:UPI000276AA3E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:64871075..64876079

Molecular Weight (calculated)

56258.3 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.267

Length

508 amino acids

Sequence
(BLAST)

001: MADTSSTSGI TSSTAASTTA NPPESKSWAD QVDEIDQAEQ SADQAEQSSA SNEEGATAEI NIGSLQVDES KRENSTLSEP EDSSIQAVTS GDTMYKSAKR
101: FEDLNLSPEL LKGLYVQMQF ERPSKIQEIS LPMILTPPYK NLIAQAHNGS GKTTCFVLGM LSRIDPKLAA PQALCICPTR ELAIQNMEVL LKMGKFTGIT
201: SELGIPADSA NYIPISKRPP VTAQVVIGTP GTINKWVTAR KLGMSCMKIL VFDEADHMLA ESGFQDDSIR IMKAIVKASA NCQVLLFSAT FGENVKAFVT
301: KIVQDLFVQD YNQMFVKKEE LSLDSVKQYK VQCPDELSKI MVIKDRILEL GQKVGQTIIF VRTRNSASML HKSLVDYGYE VTTIQGALRQ EDRDKIIKEF
401: KDGLTQILIS TDLLARGFDQ SQVNLVVNYD LPVRHESPTE PDHEVYLHRI GRAGRFGRKG AIFNLLCSDR DNMLMSKIEN HFNHQVAEIP SWSNEEDFEN
501: ALKIAGLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.