CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027728_P001	Maize	extracellular, plasma membrane	96.99	96.03
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	88.18	87.13
TraesCS4D01G272900.1	Wheat	cytosol	86.97	85.43
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	86.57	85.38
TraesCS4B01G274200.1	Wheat	cytosol	86.17	84.98
TraesCS4A01G031800.1	Wheat	cytosol	86.37	84.84
TraesCS5D01G532700.1	Wheat	cytosol	78.56	82.18
TraesCSU01G076700.1	Wheat	cytosol	78.36	81.97
TraesCS4A01G340500.1	Wheat	cytosol	78.16	81.59
TraesCS5B01G534600.1	Wheat	cytosol	78.16	80.91
GSMUA_Achr10P...	Banana	nucleus	68.54	70.95
VIT_00s2262g00010.t01	Wine grape	cytosol	32.26	65.98
GSMUA_Achr6P14220_001	Banana	cytosol	68.54	65.39
KRG99590	Soybean	endoplasmic reticulum, nucleus	59.32	60.66
Solyc04g082790.2.1	Tomato	plastid	59.72	59.72
Solyc10g085790.1.1	Tomato	nucleus	59.72	58.66
PGSC0003DMT400022137	Potato	nucleus	59.92	58.17
CDX67556	Canola	cytosol	54.51	57.63
KRG93607	Soybean	nucleus	57.11	57.58
CDY13319	Canola	cytosol	56.31	57.35
CDX95397	Canola	cytosol	56.51	57.09
CDX76225	Canola	cytosol	56.51	56.85
Bra040687.1-P	Field mustard	cytosol	56.51	56.85
Bra028547.1-P	Field mustard	cytosol	55.91	56.82
AT3G53110.1	Thale cress	cytosol	55.71	56.05
VIT_08s0007g04400.t01	Wine grape	cytosol	56.71	55.17
VIT_08s0007g04430.t01	Wine grape	cytosol	32.46	52.09
EES07819	Sorghum	cytosol	27.25	33.42
EES04512	Sorghum	cytosol	26.65	32.44
KXG22711	Sorghum	cytosol	24.25	28.21
KXG32708	Sorghum	cytosol	24.05	28.04
OQU76995	Sorghum	cytosol	27.25	26.31
EER91411	Sorghum	cytosol	25.25	24.85
EER91410	Sorghum	cytosol	25.25	24.85
KXG34209	Sorghum	plastid	16.43	18.51
OQU85369	Sorghum	mitochondrion, plastid	21.24	18.5
OQU84655	Sorghum	cytosol	21.64	14.12
KXG29825	Sorghum	cytosol	22.24	12.59

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	EntrezGene:8085458	UniProt:C5WXS7	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EER95473	ProteinID:EER95473	ProteinID:EER95473.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005730	GO:GO:0005737	GO:GO:0005886
GO:GO:0006139	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008186
GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0010501	GO:GO:0016020	GO:GO:0016787	GO:GO:0016973	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G498400	SUPFAM:SSF52540	unigene:Sbi.7333	UniParc:UPI0001A82FF1
RefSeq:XP_002468475.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76819249..76823665

Molecular Weight (calculated)

55423.2 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.337

Length

499 amino acids

Sequence
(BLAST)

001: MADKAASPEK KSWADLEEEE EAKAKAAAEA EAASSSSSSS AVPAVDEQAK QIEALSLAPA VEDAAGEEGP PLLDDSDDSQ IQAVTSGGTV YESATTFEDL
101: KLSPELLKGL HDEMGFSRPS KIQAITLPMI LTPPYKDLVA QAHNGSGKTT CFVLGMLSRV DPQRRIPQAI CICPTRELAQ QNKAVLMRMG KFTGITCACA
201: IPPAQKDYMP ISKMAPITDQ IVIGTSGTLI KWITHKKLAT RDIKILVFDE ADHMLAEDGF RSDSERIMRD IQRSAGGCQV LLFSATFNER VKDFVTKVIR
301: DGNQIFVKKE ELTLEKVKQY KVQIPDESAK IEVIRDKIFE FGQKVGQVII FVRTKQSTKN VHNALTREDY VCSSIQGSLD QSEREKIIQE FKDGYTKVLI
401: STDVLARGFD QAQVNLVINY DMPIKFGTRD EPDYEVYLHR IGRAGRFGRK GAVFNLLCGQ TDNVVMKKIE DYFQHSVPEV RNWQREEDFE AALKDAGLL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.