CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0636300-01	Rice	nucleus	87.78	87.78
Os03t0219700-01	Rice	plastid	86.56	86.56
Zm00001d017345_P002	Maize	plastid	95.64	86.3
HORVU6Hr1G059910.1	Barley	mitochondrion	83.94	80.03
TraesCS6A01G234000.1	Wheat	mitochondrion	83.77	79.87
TraesCS6B01G262800.1	Wheat	mitochondrion	83.42	79.53
TraesCS6D01G216300.1	Wheat	mitochondrion	74.52	79.37
GSMUA_Achr1P01890_001	Banana	plastid	60.38	65.41
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	62.65	64.45
AT1G12770.2	Thale cress	mitochondrion, plastid	57.94	60.25
Solyc08g080550.1.1	Tomato	nucleus	57.59	60.22
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	57.59	60.22
KRH13813	Soybean	nucleus	58.29	59.43
KRH43643	Soybean	nucleus	58.29	59.43
EES04512	Sorghum	cytosol	19.02	26.59
KXG34209	Sorghum	plastid	19.55	25.28
EES07819	Sorghum	cytosol	17.8	25.06
KXG32708	Sorghum	cytosol	18.32	24.53
KXG22711	Sorghum	cytosol	18.32	24.48
OQU76995	Sorghum	cytosol	19.2	21.28
EER95473	Sorghum	cytosol	18.5	21.24
EER91411	Sorghum	cytosol	18.5	20.91
EER91410	Sorghum	cytosol	18.5	20.91
OQU84655	Sorghum	cytosol	15.71	11.76
KXG29825	Sorghum	cytosol	15.36	9.98

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8074797	UniProt:C5XY75	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EES07197.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009663	GO:GO:0009987	GO:GO:0010497	GO:GO:0010501	GO:GO:0016043	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU85369
ProteinID:OQU85369	ProteinID:OQU85369.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3004G225600	SUPFAM:SSF52540	unigene:Sbi.18249	UniParc:UPI0001A85FBD	RefSeq:XP_002454221.1

Description

hypothetical protein

Coordinates

chr4:-:57570426..57573539

Molecular Weight (calculated)

62675.1 Da

IEP (calculated)

10.387

GRAVY (calculated)

-0.237

Length

573 amino acids

Sequence
(BLAST)

001: MRLSIGQVHR NVLALASSRS CFVLGDRLSF RMLSQPRVAG FHQTAWRGSQ ILEDNSRGGP LTLASLEVQS RVGYGKKEKV ARTAVPKPSS RASSLNVKPK
101: VSSNVKPAKS ALMKSAGIKK TLKVDEAMFS AKSFEELGLP PLLVDQLNKE GLTAPTEVQS AAIPIIAQKH DVVIQSYTGS GKTLAYLLPI LSEIGPLKRT
201: MEQDNSEKRS GVEAVIVAPS RELGMQIVRE VEKILGPSDK RLVQQLVGGA NRSRQEEALK KNKPLIVVGT PGRISEISAA GKLHTHGCRF LVLDEVDQLL
301: SFNYREDMHR ILEHVGRRSG ATSRDVLGPL ARRSERQTIL VSATIPFSVI RAARSWGHDP VLIRAKSVVP LDSVTVPRPA LSQSDANSTS PSQSVNQAAV
401: GSLPPSLEHY YCTAKAQHKV DTLRRCIHAL EAQTVIAFMN NTKPLKDVVF KLEARGIKAT ELHGDLGKLA RSTVLKKFKD GEFRVLVTNE LSARGLDVPE
501: CDLVVNLDLP TDSTHYAHRA GRTGRLGRKG IVVTICEENE GFVVRKMRKQ LAVAIKPCEF TEGELVVHKE DVE

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.