Factsheet for Os02t0636300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0219700-01	Rice	plastid	94.24	94.24
OQU85369	Sorghum	mitochondrion, plastid	87.78	87.78
HORVU6Hr1G059910.1	Barley	mitochondrion	86.39	82.36
TraesCS6B01G262800.1	Wheat	mitochondrion	85.86	81.86
TraesCS6A01G234000.1	Wheat	mitochondrion	85.51	81.53
TraesCS6D01G216300.1	Wheat	mitochondrion	76.27	81.23
Zm00001d017345_P002	Maize	plastid	87.61	79.06
GSMUA_Achr1P01890_001	Banana	plastid	60.56	65.6
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	63.18	64.99
AT1G12770.2	Thale cress	mitochondrion, plastid	58.46	60.8
KRH13813	Soybean	nucleus	59.16	60.32
KRH43643	Soybean	nucleus	59.16	60.32
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	57.07	59.67
Solyc08g080550.1.1	Tomato	nucleus	56.89	59.49
Os06t0701100-02	Rice	extracellular, nucleus, plastid	19.37	26.81
Os02t0146600-01	Rice	plastid	19.2	26.57
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	18.15	25.74
Os01t0639100-01	Rice	nucleus	18.15	25.74
Os01t0970600-01	Rice	plastid	20.59	24.89
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	18.67	24.77
Os01t0549700-01	Rice	cytosol, plastid	18.67	24.77
Os04t0533000-02	Rice	cytosol	17.98	20.68
Os02t0641800-02	Rice	plasma membrane, plastid	18.15	20.47
Os10t0503700-01	Rice	plasma membrane	18.5	20.35
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	17.8	20.2
Os02t0221300-01	Rice	cytosol	16.06	10.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4330083	EMBL:AK100670	ProteinID:BAD25075.1	ProteinID:BAF09436.1
ProteinID:BAS79942.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE57441.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os02g0636300
EnsemblPlants:Os02t0636300-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	UniProt:Q6H874	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00003B433A	RefSeq:XP_015622725.1	RefSeq:XP_015622726.1	:

Description

RNA helicase 47ADEAD-like helicase, N-terminal domain containing protein. (Os02t0636300-01)

Coordinates

chr2:-:25510882..25513587

Molecular Weight (calculated)

63288.8 Da

IEP (calculated)

10.230

GRAVY (calculated)

-0.270

Length

573 amino acids

Sequence
(BLAST)

001: MRLTVGQVHR HVLALASSRS CFVLGDHLPF RMLSLPRVVR FHQTAWHDIQ TVEDKSGPLT LASLEVQNKV EYVKKERATR TGGIKPSSRA SALNMKPKVS
101: SFNAKPVKSA LPKSAVLKKT LKIDESLFSA KSFEELGLPP LLIDRLNKEG LTAPTEVQSA AIPIISQKHD AVIQSYTGSG KTLAYLLPIL SEIGPLKRPT
201: EQDSSDKRSG VEAVIVAPSR ELGMQIVREV EKILGPNDKR LVQQLVGGAN RSRQEEALKK NKPIIVVGTP GRISEISAAG KLHTHSCRFL VLDEVDQLLS
301: FNYREDMHRI LEHVGRKSGT SSRDILGPLA RRSERQTILV SATIPFSVIR AARSWGHDPV LVRAMSVVPL ESITVPRPVL SQPDANSNSP SNSVNQAAVD
401: SLPPSLEHYY CTSKAQHKVD TLRRCIHALE AQTVIAFMNN TKPLKDVVFK LEARGMKATE LHGDLGKLAR STVLKKFKDG EFRVLVTNEL SARGLDVPEC
501: DLVINLDLPT DSTHYAHRAG RTGRLGRKGT VVTICEETET FVVRKMRKQL AVPIKPCEFT EGKLLVHKEE DVE

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.