Factsheet for PGSC0003DMT400007864

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080550.1.1	Tomato	nucleus	97.81	97.81
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	69.34	68.22
KRH13813	Soybean	nucleus	65.51	63.88
KRH43643	Soybean	nucleus	65.15	63.52
AT1G12770.2	Thale cress	mitochondrion, plastid	61.86	61.52
OQU85369	Sorghum	mitochondrion, plastid	60.22	57.59
Os02t0636300-01	Rice	nucleus	59.67	57.07
Os03t0219700-01	Rice	plastid	59.12	56.54
GSMUA_Achr1P01890_001	Banana	plastid	51.46	53.31
HORVU6Hr1G059910.1	Barley	mitochondrion	58.21	53.08
TraesCS6A01G234000.1	Wheat	mitochondrion	58.21	53.08
TraesCS6B01G262800.1	Wheat	mitochondrion	58.03	52.91
Zm00001d017345_P002	Maize	plastid	60.4	52.13
TraesCS6D01G216300.1	Wheat	mitochondrion	51.09	52.04
PGSC0003DMT400012518	Potato	cytosol	20.62	27.36
PGSC0003DMT400019783	Potato	cytosol	19.89	26.65
PGSC0003DMT400021166	Potato	cytosol	20.07	26.63
PGSC0003DMT400075336	Potato	cytosol	19.71	26.34
PGSC0003DMT400088289	Potato	cytosol	19.89	26.33
PGSC0003DMT400075339	Potato	cytosol	19.71	26.15
PGSC0003DMT400023224	Potato	nucleus	14.23	24.3
PGSC0003DMT400053566	Potato	cytosol	18.8	24.12
PGSC0003DMT400052757	Potato	cytosol	18.25	23.36
PGSC0003DMT400022137	Potato	nucleus	19.89	21.21

Protein Annotations

EntrezGene:102582232	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0ZTM6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400003039	PGSC:PGSC0003DMG400003039	EnsemblPlants:PGSC0003DMT400007864	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SignalP:SignalP-noTM	UniParc:UPI000296112C	RefSeq:XP_006358880.1	SEG:seg	:	:

Description

Increased size exclusion limit 1a [Source:PGSC_GENE;Acc:PGSC0003DMG400003039]

Coordinates

chr8:+:54248581..54252588

Molecular Weight (calculated)

59704.9 Da

IEP (calculated)

10.243

GRAVY (calculated)

-0.121

Length

548 amino acids

Sequence
(BLAST)

001: MPALVLTRAL LLIGDSLAFR KVTQFTRIAP SQGNVRFLSS SGSLTLASLG LKSEVKTVSA NEKNKLQQGI STIEVPKSRE KKRVSGNKQG LVKEKNPVDI
101: MTAPFAAKSF SELGIPPLLV ERLEKEGFTI PTDVQAAAVP TVLKNHDVVI QSYTGSGKTL AYLLPILSRV GPLKEELSDG YETGKKIDIE AVIVAPSREL
201: GMQIVREVEK LLGPANKKLV QQLVGGANRS RQEDALRKNK PAIVVGTPGR IAEISAAGKL PTHGCRFLVL DEIDQLLAFT FREDMKRILD HVGRRPGARG
301: GESNSPLVKR AARQTIMVSA TVPFSVIRAA RSWGCDPLLI QANKVVPIES VTPAGSVNIP GTPSTTDSSS NVQPMPDVQS LPPNLQHYYT ITRIQHKVDM
401: LRRCVHALDA KCVIAFMNHT KQLKDAVFKL EARGMNAAEL HGDLSKLVRS TILKKFRNGE IRVLLTNELS ARGLDLPECD LVVNLGLPTD SVHYAHRAGR
501: TGRLGRKGTV VTICEESEVF VVKKLQKQLS LSIQACEFSE GNLVIIED

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.