Factsheet for PGSC0003DMT400088289

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021166	Potato	cytosol	95.41	95.64
PGSC0003DMT400075339	Potato	cytosol	95.41	95.64
PGSC0003DMT400075336	Potato	cytosol	94.2	95.12
PGSC0003DMT400012518	Potato	cytosol	92.75	92.98
PGSC0003DMT400019783	Potato	cytosol	60.63	61.37
PGSC0003DMT400052757	Potato	cytosol	35.99	34.81
PGSC0003DMT400053566	Potato	cytosol	35.51	34.43
PGSC0003DMT400022137	Potato	nucleus	34.3	27.63
PGSC0003DMT400023224	Potato	nucleus	18.36	23.68
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	26.33	19.89

Protein Annotations

EntrezGene:102595924	MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1DFM6
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400037860	PGSC:PGSC0003DMG400037860	EnsemblPlants:PGSC0003DMT400088289
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002963085
RefSeq:XP_006338111.1	RefSeq:XP_006338112.1	:	:	:	:

Description

Eukaryotic initiation factor 4A-15 [Source:PGSC_GENE;Acc:PGSC0003DMG400037860]

Coordinates

chr5:+:27165963..27168203

Molecular Weight (calculated)

46973.5 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.245

Length

414 amino acids

Sequence
(BLAST)

001: MAGSAPEGSQ FDVRQFDSKM NELLSADDGQ DFFTSYDEIY DSFDAMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLNYELLEC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILSSGV HVVVGTPGRV FDMLRRQSLR PDHIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPPKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTKDDER MLSDIQRFYN
401: VVIEELPANV ADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.