Factsheet for PGSC0003DMT400052757

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053566	Potato	cytosol	95.79	96.02
Solyc06g066060.2.1	Tomato	nucleus	91.12	95.12
AT5G11170.1	Thale cress	cytosol	94.16	94.38
VIT_09s0002g06660.t01	Wine grape	cytosol	93.46	93.46
KRH47464	Soybean	nucleus	91.12	91.55
KRH44441	Soybean	cytosol, nucleus	91.12	91.55
KXG22711	Sorghum	cytosol	91.59	91.38
Bra023311.1-P	Field mustard	cytosol	90.89	91.1
Bra023312.1-P	Field mustard	cytosol	91.36	89.68
TraesCS1B01G477500.1	Wheat	cytosol	89.95	89.33
KXG32708	Sorghum	cytosol	89.25	89.25
CDX85725	Canola	cytosol	91.82	88.91
TraesCS1D01G451300.1	Wheat	cytosol	87.62	88.65
CDX70383	Canola	cytosol	92.52	88.59
TraesCS3B01G224400.1	Wheat	cytosol	88.55	88.55
TraesCS1A01G443400.1	Wheat	cytosol	89.72	88.48
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	89.25	88.43
CDY51112	Canola	cytosol	90.89	88.41
TraesCS3D01G204400.1	Wheat	cytosol	88.32	88.32
Os01t0549700-01	Rice	cytosol, plastid	89.02	88.19
VIT_04s0008g05330.t01	Wine grape	cytosol	93.69	87.75
Bra008984.1-P	Field mustard	cytosol	86.22	86.62
TraesCS3A01G200100.1	Wheat	cytosol	87.85	86.24
GSMUA_Achr8P05380_001	Banana	cytosol	91.82	84.88
AT5G11200.2	Thale cress	cytosol	94.16	82.92
HORVU1Hr1G095100.5	Barley	cytosol	88.08	80.38
CDY71952	Canola	cytosol	77.57	79.62
CDX78412	Canola	cytosol	92.29	79.48
CDX85726	Canola	cytosol	90.89	79.39
Zm00001d009761_P004	Maize	cytosol	90.65	79.35
CDX69778	Canola	cytosol	91.36	78.99
Bra008983.1-P	Field mustard	cytosol	86.92	78.81
CDY51111	Canola	cytosol	44.86	77.11
CDX69777	Canola	cytosol, nucleus, plasma membrane	91.82	75.14
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	83.41	71.69
Bra006091.1-P	Field mustard	cytosol	84.81	69.27
Zm00001d011149_P002	Maize	cytosol	26.4	68.07
Zm00001d011150_P005	Maize	cytosol	66.36	61.34
CDY56825	Canola	cytosol	31.07	58.33
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.37	43.48
PGSC0003DMT400012518	Potato	cytosol	34.81	36.08
PGSC0003DMT400088289	Potato	cytosol	34.81	35.99
PGSC0003DMT400075336	Potato	cytosol	34.35	35.85
PGSC0003DMT400075339	Potato	cytosol	34.58	35.84
PGSC0003DMT400021166	Potato	cytosol	34.58	35.84
PGSC0003DMT400019783	Potato	cytosol	31.31	32.76
PGSC0003DMT400022137	Potato	nucleus	29.21	24.32
PGSC0003DMT400023224	Potato	nucleus	14.25	19.0
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	23.36	18.25

Protein Annotations

EntrezGene:102587835	MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1BTY2	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400020476	PGSC:PGSC0003DMG400020476	EnsemblPlants:PGSC0003DMT400052757	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002965745	RefSeq:XP_006353691.1	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 56 [Source:PGSC_GENE;Acc:PGSC0003DMG400020476]

Coordinates

chr6:-:45663488..45670958

Molecular Weight (calculated)

48373.2 Da

IEP (calculated)

5.484

GRAVY (calculated)

-0.272

Length

428 amino acids

Sequence
(BLAST)

001: MGDTKENEAY EEELLDYEED DEKAPDSVNG KVNGESAKKG YVGIHSSGFR DFLLKPELLR AIVDSGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSTLQQIE PVPGQVAALV LCHTRELAYQ ICHEFERFST YLPDIKVAVF YGGVNIKLHK ELLKNECPHV VVGTPGRVLA LAREKDLSLK NVRHFILDEC
201: DKMLDSLDMR RDVQAIFKMT PHDKQVMMFS ATLSKEIRPV CKKFMQDPME IYVDDEAKLT LHGLVQHYIK LSETEKNRKL NDLLDALDFN QVVIFVKSVN
301: RAAELNKLLA ECNFPSICIH SGMTQEERLT RYKSFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSE
401: VLNQVQERFE VDIKELPEQI DTSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.