CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G11170.1	Thale cress	cytosol	92.62	96.96
CDX85725	Canola	cytosol	94.18	95.25
CDY51112	Canola	cytosol	93.06	94.55
PGSC0003DMT400052757	Potato	cytosol	88.59	92.52
PGSC0003DMT400053566	Potato	cytosol	88.14	92.27
VIT_09s0002g06660.t01	Wine grape	cytosol	87.02	90.89
Solyc06g066060.2.1	Tomato	nucleus	83.0	90.49
KRH44441	Soybean	cytosol, nucleus	85.01	89.2
KRH47464	Soybean	nucleus	85.01	89.2
KXG22711	Sorghum	cytosol	84.79	88.34
KXG32708	Sorghum	cytosol	84.56	88.32
TraesCS1B01G477500.1	Wheat	cytosol	84.79	87.94
TraesCS3B01G224400.1	Wheat	cytosol	84.12	87.85
TraesCS3D01G204400.1	Wheat	cytosol	83.89	87.62
TraesCS1A01G443400.1	Wheat	cytosol	84.79	87.33
TraesCS1D01G451300.1	Wheat	cytosol	82.55	87.23
CDX78412	Canola	cytosol	96.64	86.92
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	83.89	86.81
Os01t0549700-01	Rice	cytosol, plastid	83.67	86.57
VIT_04s0008g05330.t01	Wine grape	cytosol	87.7	85.78
CDX85726	Canola	cytosol	93.96	85.71
TraesCS3A01G200100.1	Wheat	cytosol	83.45	85.55
CDX69778	Canola	cytosol	94.63	85.45
AT5G11200.2	Thale cress	cytosol	92.62	85.19
GSMUA_Achr8P05380_001	Banana	cytosol	87.47	84.45
CDY71952	Canola	cytosol	78.75	84.41
CDY51111	Canola	cytosol	45.86	82.33
CDX69777	Canola	cytosol, nucleus, plasma membrane	95.75	81.84
Solyc08g061000.2.1	Tomato	nucleus	88.14	81.24
HORVU1Hr1G095100.5	Barley	cytosol	83.45	79.53
Zm00001d009761_P004	Maize	cytosol	84.56	77.3
Bra006091.1-P	Field mustard	cytosol	88.59	75.57
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	78.52	70.48
Zm00001d011149_P002	Maize	cytosol	24.16	65.06
Zm00001d011150_P005	Maize	cytosol	63.98	61.77
CDY56825	Canola	cytosol	31.1	60.96
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	29.98	44.82
CDY37498	Canola	cytosol, mitochondrion	8.95	43.48
CDY26130	Canola	cytosol	9.4	41.58
CDY67069	Canola	cytosol	8.95	39.6
CDY45702	Canola	cytosol	17.0	36.89
CDY33073	Canola	cytosol	33.33	36.16
CDY24057	Canola	cytosol	33.33	36.16
CDY39079	Canola	cytosol	33.11	35.92
CDY32586	Canola	cytosol	30.2	35.71
CDY02469	Canola	cytosol	32.89	35.68
CDY54061	Canola	cytosol	25.95	35.58
CDY10607	Canola	cytosol	32.66	35.52
CDY08220	Canola	cytosol	32.66	35.44
CDY72259	Canola	cytosol	17.23	34.68
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.66	34.19
CDY55205	Canola	cytosol	31.99	33.81
CDX97528	Canola	cytosol	31.99	33.65
CDX82505	Canola	cytosol	32.21	33.64
CDY22577	Canola	cytosol	11.19	33.56
CDX82280	Canola	cytosol	30.43	33.33
CDY22956	Canola	cytosol	30.43	33.33
CDX75739	Canola	cytosol	32.44	33.26
CDY24617	Canola	cytosol	30.2	33.09
CDY33416	Canola	cytosol	30.2	33.09
CDY51692	Canola	cytosol	30.2	33.09
CDY42205	Canola	cytosol	30.2	33.09
CDY58940	Canola	cytosol	29.08	32.18
CDY03623	Canola	cytosol	28.86	31.93
CDY11154	Canola	cytosol	13.65	30.2
CDY07205	Canola	cytosol	32.66	29.74
CDY48935	Canola	cytosol, plastid	31.54	29.68
CDY58787	Canola	cytosol	31.99	29.67
CDX71756	Canola	cytosol	31.54	29.44
CDY51147	Canola	cytosol	32.66	29.44
CDX91901	Canola	cytosol	32.44	28.94
CDY54037	Canola	cytosol	17.0	28.46
CDY37067	Canola	cytosol	31.99	28.04
CDX74342	Canola	cytosol	32.21	28.02
CDY27357	Canola	cytosol, plastid	31.77	27.9
CDX67556	Canola	cytosol	28.86	27.33
CDY53867	Canola	cytosol	25.5	27.01
CDX95397	Canola	cytosol	29.75	26.92
CDX76225	Canola	cytosol	29.75	26.81
CDY13319	Canola	cytosol	29.31	26.73
CDX72939	Canola	mitochondrion, nucleus	25.28	24.25
CDY47205	Canola	plastid	20.58	19.25
CDY02574	Canola	plastid	20.58	19.25
CDY68148	Canola	nucleus	25.5	15.43
CDY49860	Canola	cytosol	2.46	8.8

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	GO:A0A078C5U9	EnsemblPlants:CDX70383	ProteinID:CDX70383
ProteinID:CDX70383.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00140184001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EE343A	SEG:seg	:	:

Description

BnaC03g04670D

Coordinates

chrLK031791:-:169419..173107

Molecular Weight (calculated)

50629.1 Da

IEP (calculated)

5.484

GRAVY (calculated)

-0.219

Length

447 amino acids

Sequence
(BLAST)

001: MGDTRDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKILYASFF VLCLSPMFDK IVQHECIPQA
101: ILGMDVICQA KSGMGKTAVF VLSTLQQIEP TPGQVSALIL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNNKIHKE LLKNECPHIV VGTPGRVLGL
201: ARDKDLSLKN VRHFILDECD KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN
301: DLLDALDFNQ VVIFVKSVSR AGELNKLLIE CNFPSICIHS GMSQEERLTH YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG
401: RFGTKGLAIT FVASASDSEV LNQVQDRFEV DIKELPEQID TSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.