Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45702 | Canola | cytosol | 41.96 | 97.57 |
| Bra007587.1-P | Field mustard | cytosol | 93.95 | 95.14 |
| CDY48935 | Canola | cytosol, plastid | 92.69 | 93.47 |
| CDY58787 | Canola | cytosol | 93.53 | 92.95 |
| AT3G61240.1 | Thale cress | cytosol | 92.9 | 89.36 |
| KRH04755 | Soybean | cytosol | 47.6 | 86.04 |
| CDY54061 | Canola | cytosol | 56.37 | 82.82 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 56.37 | 79.41 |
| CDY37067 | Canola | cytosol | 84.34 | 79.22 |
| CDY27357 | Canola | cytosol, plastid | 83.51 | 78.59 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 78.29 | 78.12 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 78.91 | 76.83 |
| CDY07205 | Canola | cytosol | 78.71 | 76.78 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 77.66 | 76.54 |
| CDY51147 | Canola | cytosol | 79.12 | 76.41 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 77.87 | 75.97 |
| Solyc10g017530.2.1 | Tomato | nucleus | 77.45 | 75.56 |
| CDX91901 | Canola | cytosol | 78.71 | 75.25 |
| KRH48173 | Soybean | mitochondrion | 78.08 | 74.8 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 76.83 | 74.8 |
| KRH65096 | Soybean | nucleus | 77.87 | 74.75 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 78.29 | 74.7 |
| KRH48170 | Soybean | endoplasmic reticulum | 78.29 | 74.55 |
| Solyc01g094350.2.1 | Tomato | nucleus | 77.24 | 74.3 |
| Os04t0533000-02 | Rice | cytosol | 76.83 | 73.9 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 76.62 | 73.55 |
| CDX74342 | Canola | cytosol | 78.91 | 73.54 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 76.62 | 73.25 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 77.04 | 72.64 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 75.99 | 72.37 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 76.41 | 72.05 |
| EER91410 | Sorghum | cytosol | 75.99 | 71.79 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 77.24 | 71.43 |
| EER91411 | Sorghum | cytosol | 75.57 | 71.4 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 77.45 | 70.94 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 77.24 | 70.75 |
| Os10t0503700-01 | Rice | plasma membrane | 76.83 | 70.63 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 77.04 | 70.55 |
| Zm00001d051268_P004 | Maize | extracellular | 76.41 | 70.11 |
| Zm00001d017384_P008 | Maize | cytosol | 76.62 | 69.9 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 75.16 | 68.57 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 74.95 | 68.38 |
| KRH40488 | Soybean | cytosol | 76.62 | 68.09 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 74.74 | 68.06 |
| GSMUA_Achr11P... | Banana | cytosol | 77.66 | 65.84 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 74.95 | 63.65 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 70.98 | 63.31 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.56 | 44.57 |
| CDY26130 | Canola | cytosol | 9.39 | 44.55 |
| CDY67069 | Canola | cytosol | 8.35 | 39.6 |
| CDY10607 | Canola | cytosol | 31.73 | 36.98 |
| CDY32586 | Canola | cytosol | 29.02 | 36.77 |
| CDY08220 | Canola | cytosol | 31.52 | 36.65 |
| CDY02469 | Canola | cytosol | 31.52 | 36.65 |
| CDY39079 | Canola | cytosol | 31.52 | 36.65 |
| CDY24057 | Canola | cytosol | 31.11 | 36.16 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.94 | 35.83 |
| CDY33073 | Canola | cytosol | 30.48 | 35.44 |
| CDX97528 | Canola | cytosol | 31.32 | 35.29 |
| CDY55205 | Canola | cytosol | 31.11 | 35.22 |
| CDX82505 | Canola | cytosol | 31.11 | 34.81 |
| CDX82280 | Canola | cytosol | 29.65 | 34.8 |
| CDY22956 | Canola | cytosol | 29.65 | 34.8 |
| CDY33416 | Canola | cytosol | 29.65 | 34.8 |
| CDY51692 | Canola | cytosol | 29.65 | 34.8 |
| CDY42205 | Canola | cytosol | 29.65 | 34.8 |
| CDY24617 | Canola | cytosol | 29.44 | 34.56 |
| CDY72259 | Canola | cytosol | 15.87 | 34.23 |
| CDY22577 | Canola | cytosol | 10.65 | 34.23 |
| CDX75739 | Canola | cytosol | 31.11 | 34.17 |
| CDY58940 | Canola | cytosol | 27.56 | 32.67 |
| CDY11154 | Canola | cytosol | 13.78 | 32.67 |
| CDY03623 | Canola | cytosol | 27.35 | 32.43 |
| CDY51112 | Canola | cytosol | 29.65 | 32.27 |
| CDX85725 | Canola | cytosol | 29.65 | 32.13 |
| CDX70383 | Canola | cytosol | 29.44 | 31.54 |
| CDY71952 | Canola | cytosol | 26.1 | 29.98 |
| CDY51111 | Canola | cytosol | 15.45 | 29.72 |
| CDX85726 | Canola | cytosol | 29.65 | 28.98 |
| CDY56825 | Canola | cytosol | 13.57 | 28.51 |
| CDX69778 | Canola | cytosol | 29.44 | 28.48 |
| CDX78412 | Canola | cytosol | 29.44 | 28.37 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 29.44 | 26.96 |
| CDX67556 | Canola | cytosol | 26.51 | 26.91 |
| CDX76225 | Canola | cytosol | 27.77 | 26.81 |
| CDY54037 | Canola | cytosol | 14.82 | 26.59 |
| CDY53867 | Canola | cytosol | 23.38 | 26.54 |
| CDX95397 | Canola | cytosol | 27.35 | 26.52 |
| CDY13319 | Canola | cytosol | 26.72 | 26.12 |
| CDX72939 | Canola | mitochondrion, nucleus | 23.8 | 24.46 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.2 | 22.74 |
| CDY47205 | Canola | plastid | 21.09 | 21.13 |
| CDY02574 | Canola | plastid | 21.09 | 21.13 |
| CDY68148 | Canola | nucleus | 24.01 | 15.56 |
| CDY49860 | Canola | cytosol | 1.46 | 5.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078C428 | EnsemblPlants:CDX71756 | ProteinID:CDX71756 | ProteinID:CDX71756.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00155454001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EC4F61 |
Description
BnaC08g31180D
Coordinates
chrLK031795:-:329307..332113
Molecular Weight (calculated)
54375.8 Da
IEP (calculated)
9.039
GRAVY (calculated)
-0.341
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNRGRYPP GMGTGRGAPP NPDYQSQNHH QQQWTRRAQL PGNANEVQKT TSPPPVASSD PKKKLIIIRL CSPFTLSGQD WKATLRLPPP DTRYQTADVT
101: ATKGNEFEDY FLKRDLLKGI YEKGFEKPSP IQEESIPIAL TGSDILARAK NGTGKTGAFC IPVLERIDPN TNVIQAMILV PTRELALQTS QVCKELSKYL
201: NIQVMVTTGG TSLRDDIMRL HQPVHLLVGT PGRILDLTKK GVCVLKDCTM LVMDEADKLL SAEFQPSLEE LIQFLPQNRQ FLMYSATFPV TVKAFKDRHL
301: RKPYVINLMD QLTLMGVTQY YAFVEERQKV HCLNTLFSKL QINQSIIFCN SVNRVELLAK KITELGYSCF YIHAKMVQDH RNRVFHEFRN GACRNLVCTD
401: LFTRGIDIQA VNVVINFDFP RTSESYLHRV GRSGRFGHLG LAVNLVTYED RFKMYQTEQE LGTEIKPIPS NIDQAIYCQ
101: ATKGNEFEDY FLKRDLLKGI YEKGFEKPSP IQEESIPIAL TGSDILARAK NGTGKTGAFC IPVLERIDPN TNVIQAMILV PTRELALQTS QVCKELSKYL
201: NIQVMVTTGG TSLRDDIMRL HQPVHLLVGT PGRILDLTKK GVCVLKDCTM LVMDEADKLL SAEFQPSLEE LIQFLPQNRQ FLMYSATFPV TVKAFKDRHL
301: RKPYVINLMD QLTLMGVTQY YAFVEERQKV HCLNTLFSKL QINQSIIFCN SVNRVELLAK KITELGYSCF YIHAKMVQDH RNRVFHEFRN GACRNLVCTD
401: LFTRGIDIQA VNVVINFDFP RTSESYLHRV GRSGRFGHLG LAVNLVTYED RFKMYQTEQE LGTEIKPIPS NIDQAIYCQ
001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
Arabidopsis Description
RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.