Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008439_P001 | |
| Zm00001d027310_P001 | |
| Zm00001d040142_P001 | |
| Zm00001d051566_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051268_P004 | Maize | extracellular | 93.52 | 94.06 |
| KRH04755 | Soybean | cytosol | 46.29 | 91.7 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 87.81 | 89.0 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 88.38 | 88.72 |
| CDY54061 | Canola | cytosol | 55.05 | 88.65 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 88.19 | 88.53 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 88.0 | 88.34 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 79.05 | 86.46 |
| CDY45702 | Canola | cytosol | 33.9 | 86.41 |
| Bra008527.1-P | Field mustard | cytosol | 53.52 | 85.15 |
| Solyc10g017530.2.1 | Tomato | nucleus | 79.05 | 84.52 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 54.67 | 84.41 |
| KRH48170 | Soybean | endoplasmic reticulum | 79.81 | 83.3 |
| KRH48173 | Soybean | mitochondrion | 78.86 | 82.8 |
| Solyc01g094350.2.1 | Tomato | nucleus | 78.48 | 82.73 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 79.05 | 82.67 |
| KRH65096 | Soybean | nucleus | 78.48 | 82.57 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 78.48 | 81.91 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 77.52 | 80.59 |
| CDY51147 | Canola | cytosol | 75.81 | 80.24 |
| CDX91901 | Canola | cytosol | 76.57 | 80.24 |
| CDY07205 | Canola | cytosol | 74.86 | 80.04 |
| Bra037351.1-P | Field mustard | cytosol | 76.95 | 79.22 |
| CDX74342 | Canola | cytosol | 76.95 | 78.6 |
| Bra000965.1-P | Field mustard | cytosol | 76.76 | 78.56 |
| Bra007587.1-P | Field mustard | cytosol | 70.1 | 77.8 |
| Bra003442.1-P | Field mustard | cytosol | 70.48 | 77.57 |
| CDY58787 | Canola | cytosol | 71.05 | 77.39 |
| AT3G61240.1 | Thale cress | cytosol | 73.14 | 77.11 |
| CDY48935 | Canola | cytosol, plastid | 69.52 | 76.84 |
| CDX71756 | Canola | cytosol | 69.9 | 76.62 |
| CDY37067 | Canola | cytosol | 72.95 | 75.1 |
| CDY27357 | Canola | cytosol, plastid | 72.19 | 74.46 |
| GSMUA_Achr11P... | Banana | cytosol | 80.0 | 74.34 |
| Bra039312.1-P | Field mustard | cytosol | 72.95 | 74.08 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 73.71 | 73.3 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 71.43 | 69.83 |
| Zm00001d014673_P001 | Maize | plastid | 29.52 | 37.44 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 29.33 | 37.2 |
| Zm00001d015251_P001 | Maize | extracellular | 28.95 | 37.07 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 28.57 | 36.85 |
| Zm00001d018542_P006 | Maize | cytosol | 28.57 | 33.86 |
| Zm00001d009761_P004 | Maize | cytosol | 27.81 | 29.86 |
| Zm00001d011149_P002 | Maize | cytosol | 9.33 | 29.52 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 23.81 | 24.8 |
| Zm00001d011150_P005 | Maize | cytosol | 19.81 | 22.46 |
| Zm00001d011790_P001 | Maize | plastid | 17.52 | 20.58 |
| Zm00001d017345_P002 | Maize | plastid | 20.19 | 16.69 |
| Zm00001d016350_P001 | Maize | vacuole | 14.86 | 15.48 |
| Zm00001d016351_P002 | Maize | nucleus | 24.38 | 14.35 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:AQK73049.1 | ProteinID:AQK73050.1 | ProteinID:AQK73051.1 | ProteinID:AQK73055.1 |
| ProteinID:AQK73057.1 | UniProt:B8A2Z7 | EMBL:BT055939 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF352 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI00018908C4 | EnsemblPlantsGene:Zm00001d017384 | EnsemblPlants:Zm00001d017384_P008 | EnsemblPlants:Zm00001d017384_T008 | SEG:seg |
Description
DEAD-box ATP-dependent RNA helicase 8
Coordinates
chr5:+:193962648..193972107
Molecular Weight (calculated)
59861.6 Da
IEP (calculated)
8.760
GRAVY (calculated)
-0.534
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRARYPSG MGNGRGGNLN YYGRGPPPQQ PHQHHNHQQT SGAHHHQQTS GAHHHQQYAQ RQHQHQHHGH NRHQQQQQHH IYQQQQQQWL RRSQIARETS
101: GAAVTSEPKS LAPSTAADGV DSSSQDWKAQ LKLPPPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGSD ILARAKNGTG
201: KTAAFCIPAL EKIDQEKNAI QVVILVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIVRLYQPV HLLVGTPGRI LDLTKKGVCI LNDCSMLIMD
301: EADKLLSPEF QPSIEQLIRY LPASRQILMF SATFPVTVKE FKDKYLPKPY VINLMDELTL KGITQFYAFV EERQKVHCLN TLFSKLQINQ SIIFCNSVNR
401: VELLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNSE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL
501: YRIEQELGTE IKSIPPQIDQ AIYCQ
101: GAAVTSEPKS LAPSTAADGV DSSSQDWKAQ LKLPPPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGSD ILARAKNGTG
201: KTAAFCIPAL EKIDQEKNAI QVVILVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIVRLYQPV HLLVGTPGRI LDLTKKGVCI LNDCSMLIMD
301: EADKLLSPEF QPSIEQLIRY LPASRQILMF SATFPVTVKE FKDKYLPKPY VINLMDELTL KGITQFYAFV EERQKVHCLN TLFSKLQINQ SIIFCNSVNR
401: VELLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNSE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL
501: YRIEQELGTE IKSIPPQIDQ AIYCQ
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.