Factsheet for Bra003442.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58787	Canola	cytosol	98.74	97.72
CDY45702	Canola	cytosol	42.14	97.57
Bra007587.1-P	Field mustard	cytosol	93.5	94.29
AT3G61240.1	Thale cress	cytosol	93.71	89.76
KRH04755	Soybean	cytosol	48.22	86.79
Bra008527.1-P	Field mustard	cytosol	55.56	80.3
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	57.02	80.0
Bra039312.1-P	Field mustard	cytosol	85.74	79.11
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	78.62	78.12
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	79.66	77.24
GSMUA_Achr2P10560_001	Banana	cytosol	78.41	76.95
VIT_15s0046g03200.t01	Wine grape	cytosol	78.83	76.58
Solyc10g017530.2.1	Tomato	nucleus	78.2	75.97
KRH48170	Soybean	endoplasmic reticulum	79.45	75.35
KRH65098	Soybean	endoplasmic reticulum, nucleus	79.25	75.3
KRH48173	Soybean	mitochondrion	78.83	75.2
KRH65096	Soybean	nucleus	78.62	75.15
GSMUA_Achr5P12220_001	Banana	cytosol	77.36	75.0
Bra037351.1-P	Field mustard	cytosol	80.08	74.9
Solyc01g094350.2.1	Tomato	nucleus	77.99	74.7
Os04t0533000-02	Rice	cytosol	77.78	74.5
Bra000965.1-P	Field mustard	cytosol	80.08	74.46
TraesCS2B01G387200.1	Wheat	cytosol	77.78	74.35
TraesCS2A01G370200.2	Wheat	cytosol	77.78	74.05
Os02t0641800-02	Rice	plasma membrane, plastid	77.99	73.23
TraesCS2D01G366700.1	Wheat	cytosol	77.57	72.83
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	76.52	72.56
EER91410	Sorghum	cytosol	76.73	72.19
HORVU6Hr1G060630.1	Barley	cytosol	78.2	72.01
EER91411	Sorghum	cytosol	76.52	71.99
TraesCS6A01G236800.1	Wheat	cytosol	78.2	71.32
Os10t0503700-01	Rice	plasma membrane	77.78	71.21
TraesCS6D01G219400.1	Wheat	cytosol	77.99	71.13
Zm00001d051268_P004	Maize	extracellular	77.78	71.07
TraesCS6B01G265300.1	Wheat	cytosol	77.78	70.94
Zm00001d017384_P008	Maize	cytosol	77.57	70.48
TraesCS1A01G174600.1	Wheat	cytosol	75.89	68.95
TraesCS1B01G189900.1	Wheat	cytosol	75.68	68.76
KRH40488	Soybean	cytosol	77.36	68.46
TraesCS1D01G164500.1	Wheat	cytosol	75.47	68.44
GSMUA_Achr11P...	Banana	cytosol	78.41	66.19
HORVU1Hr1G046020.1	Barley	cytosol	75.68	64.01
Solyc05g048850.2.1	Tomato	mitochondrion	71.91	63.87
Bra030892.1-P	Field mustard	cytosol	5.66	39.71
Bra030893.1-P	Field mustard	cytosol	31.66	36.65
Bra027387.1-P	Field mustard	cytosol	31.45	36.41
Bra014365.1-P	Field mustard	cytosol	31.45	36.41
Bra021517.1-P	Field mustard	cytosol	31.45	36.41
Bra029124.1-P	Field mustard	cytosol	31.24	36.34
Bra001530.1-P	Field mustard	cytosol	31.66	36.3
Bra037977.1-P	Field mustard	cytosol	31.24	36.16
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.87	35.6
Bra032127.1-P	Field mustard	cytosol	29.56	34.56
Bra022449.1-P	Field mustard	cytosol	29.56	34.56
Bra038231.1-P	Field mustard	cytosol	29.56	34.56
Bra023311.1-P	Field mustard	cytosol	29.77	33.26
Bra014267.1-P	Field mustard	cytosol	27.67	32.67
Bra023312.1-P	Field mustard	cytosol	29.77	32.57
Bra008984.1-P	Field mustard	cytosol	28.93	32.39
Bra008983.1-P	Field mustard	cytosol	28.93	29.24
Bra006091.1-P	Field mustard	cytosol	29.35	26.72
Bra040687.1-P	Field mustard	cytosol	27.67	26.61
Bra028547.1-P	Field mustard	cytosol	26.83	26.07
Bra023712.1-P	Field mustard	plastid	21.59	21.55
Bra016037.1-P	Field mustard	cytosol	31.66	20.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra003442	EnsemblPlants:Bra003442.1	EnsemblPlants:Bra003442.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CGV9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002541802	SEG:seg

Description

AT3G61240 (E=1e-237) | DEAD/DEAH box helicase, putative (RH12)

Coordinates

chrA07:+:13202717..13205034

Molecular Weight (calculated)

54058.0 Da

IEP (calculated)

8.644

GRAVY (calculated)

-0.399

Length

477 amino acids

Sequence
(BLAST)

001: MNNNRGRYPP GNGTGRGAPP HPDYQSYGQQ PQNHQQFQQW SRRAQLPGNA NEVQNTTSSQ PPNDHKFSGS VTLSGGKDWK ATLKLPPPDT RYQTADVTAT
101: KGNEFEDYFL KRDLLKGIYE KGFEKPSPIQ EESIPIALTG SDILARAKNG TGKTGAFCIP VLEKIDPNTN VIQAMILVPT RELALQTSQV CKELSKYLNI
201: QVMVTTGGTS LRDDIMRLHQ PVHLLVGTPG RILDLTKKGV CVLKDCTMLV MDEADKLLSA EFQPSLEELI QFLPENRQFL MFSATFPVTV KAFKDRHLRK
301: PYVINLMDQL TLMGVTQYYA FVEERQKVHC LNTLFSKLQI NQSIIFCNSV NRVELLAKKI TELGYSCFYI HAKMVQDHRN RVFHEFRNGA CRNLVCTDLF
401: TRGIDIQAVN VVINFDFPRT SESYLHRVGR SGRFGHLGLA VNLVTYEDRF KMYQTEQELG TEIKPIPSQI DQAIYCQ

Best Arabidopsis Sequence Match ( AT3G61240.2 )
(BLAST)

001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ

Arabidopsis Description

RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.