Factsheet for Bra023311.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G11170.1	Thale cress	cytosol	96.02	96.02
Bra023312.1-P	Field mustard	cytosol	96.02	94.04
Bra008984.1-P	Field mustard	cytosol	90.87	91.08
PGSC0003DMT400052757	Potato	cytosol	91.1	90.89
PGSC0003DMT400053566	Potato	cytosol	90.87	90.87
VIT_09s0002g06660.t01	Wine grape	cytosol	90.16	89.95
Solyc06g066060.2.1	Tomato	nucleus	85.48	89.02
KRH47464	Soybean	nucleus	88.06	88.26
KRH44441	Soybean	cytosol, nucleus	88.06	88.26
KXG22711	Sorghum	cytosol	87.82	87.41
KXG32708	Sorghum	cytosol	87.59	87.38
TraesCS1B01G477500.1	Wheat	cytosol	88.06	87.24
TraesCS3D01G204400.1	Wheat	cytosol	87.35	87.15
TraesCS3B01G224400.1	Wheat	cytosol	87.12	86.92
TraesCS1A01G443400.1	Wheat	cytosol	88.06	86.64
TraesCS1D01G451300.1	Wheat	cytosol	85.71	86.52
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	86.89	85.88
Os01t0549700-01	Rice	cytosol, plastid	86.65	85.65
VIT_04s0008g05330.t01	Wine grape	cytosol	90.63	84.68
TraesCS3A01G200100.1	Wheat	cytosol	86.42	84.63
AT5G11200.2	Thale cress	cytosol	96.02	84.36
Bra008983.1-P	Field mustard	cytosol	92.74	83.9
GSMUA_Achr8P05380_001	Banana	cytosol	90.4	83.37
CDY51111	Canola	cytosol	48.48	83.13
Solyc08g061000.2.1	Tomato	nucleus	90.87	80.0
HORVU1Hr1G095100.5	Barley	cytosol	86.65	78.89
Zm00001d009761_P004	Maize	cytosol	86.89	75.87
Bra006091.1-P	Field mustard	cytosol	90.4	73.66
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	81.26	69.68
Zm00001d011149_P002	Maize	cytosol	24.59	63.25
Zm00001d011150_P005	Maize	cytosol	66.04	60.91
CDY56825	Canola	cytosol	31.85	59.65
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	31.15	44.48
Bra030892.1-P	Field mustard	cytosol	7.03	44.12
Bra027387.1-P	Field mustard	cytosol	34.43	35.68
Bra021517.1-P	Field mustard	cytosol	34.43	35.68
Bra030893.1-P	Field mustard	cytosol	34.43	35.68
Bra037977.1-P	Field mustard	cytosol	34.43	35.68
Bra029124.1-P	Field mustard	cytosol	34.19	35.61
Bra001530.1-P	Field mustard	cytosol	34.66	35.58
Bra014365.1-P	Field mustard	cytosol	34.19	35.44
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.19	34.19
Bra008527.1-P	Field mustard	cytosol	26.23	33.94
Bra032127.1-P	Field mustard	cytosol	31.85	33.33
Bra038231.1-P	Field mustard	cytosol	31.62	33.09
Bra022449.1-P	Field mustard	cytosol	31.62	33.09
Bra014267.1-P	Field mustard	cytosol	30.21	31.93
Bra007587.1-P	Field mustard	cytosol	33.26	30.02
Bra003442.1-P	Field mustard	cytosol	33.26	29.77
Bra037351.1-P	Field mustard	cytosol	34.43	28.82
Bra000965.1-P	Field mustard	cytosol	33.96	28.27
Bra039312.1-P	Field mustard	cytosol	33.49	27.66
Bra040687.1-P	Field mustard	cytosol	30.68	26.41
Bra028547.1-P	Field mustard	cytosol	29.98	26.07
Bra016037.1-P	Field mustard	cytosol	33.72	19.81
Bra023712.1-P	Field mustard	plastid	21.55	19.25

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023311	EnsemblPlants:Bra023311.1	EnsemblPlants:Bra023311.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M4E3F9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002543335	SEG:seg	:	:	:

Description

AT5G11200 (E=4e-229) | DEAD/DEAH box helicase, putative

Coordinates

chrA02:-:2782197..2784994

Molecular Weight (calculated)

48353.3 Da

IEP (calculated)

5.629

GRAVY (calculated)

-0.269

Length

427 amino acids

Sequence
(BLAST)

001: MGDVRDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP TPGQVSALIL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNNKIHKD LLKNECPHIV VGTPGRVLGL ARDKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HEKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL GEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: ARELNKLLIE CNFPSICIHS GMSQEERLTH YKSFKEGQKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQARFEV DIKQLPENID TSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.