Factsheet for Solyc06g066060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052757	Potato	cytosol	95.12	91.12
VIT_09s0002g06660.t01	Wine grape	cytosol	92.2	88.32
AT5G11170.1	Thale cress	cytosol	91.71	88.06
KRH47464	Soybean	nucleus	90.73	87.32
KRH44441	Soybean	cytosol, nucleus	90.73	87.32
KXG32708	Sorghum	cytosol	90.73	86.92
KXG22711	Sorghum	cytosol	90.73	86.71
TraesCS3B01G224400.1	Wheat	cytosol	89.51	85.75
TraesCS3D01G204400.1	Wheat	cytosol	89.27	85.51
Bra023311.1-P	Field mustard	cytosol	89.02	85.48
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	89.76	85.19
Os01t0549700-01	Rice	cytosol, plastid	89.76	85.19
TraesCS1B01G477500.1	Wheat	cytosol	89.27	84.92
Bra023312.1-P	Field mustard	cytosol	89.76	84.4
TraesCS1A01G443400.1	Wheat	cytosol	89.27	84.33
TraesCS1D01G451300.1	Wheat	cytosol	86.83	84.16
CDY51112	Canola	cytosol	90.0	83.86
CDX85725	Canola	cytosol	90.24	83.71
TraesCS3A01G200100.1	Wheat	cytosol	88.78	83.49
CDX70383	Canola	cytosol	90.49	83.0
VIT_04s0008g05330.t01	Wine grape	cytosol	92.2	82.71
Bra008984.1-P	Field mustard	cytosol	84.63	81.46
GSMUA_Achr8P05380_001	Banana	cytosol	91.22	80.78
CDY71952	Canola	cytosol	80.98	79.62
Solyc08g061000.2.1	Tomato	nucleus	93.9	79.38
HORVU1Hr1G095100.5	Barley	cytosol	88.54	77.4
AT5G11200.2	Thale cress	cytosol	91.71	77.37
Zm00001d009761_P004	Maize	cytosol	89.76	75.26
CDX69778	Canola	cytosol	90.24	74.75
CDX78412	Canola	cytosol	90.49	74.65
CDX85726	Canola	cytosol	89.02	74.49
Bra008983.1-P	Field mustard	cytosol	84.88	73.73
CDX69777	Canola	cytosol, nucleus, plasma membrane	90.0	70.55
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	85.61	70.48
CDY51111	Canola	cytosol	41.22	67.87
Zm00001d011149_P002	Maize	cytosol	27.32	67.47
Bra006091.1-P	Field mustard	cytosol	82.68	64.69
Zm00001d011150_P005	Maize	cytosol	67.07	59.4
CDY56825	Canola	cytosol	32.2	57.89
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	31.46	43.14
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	35.37	36.8
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	35.85	35.59
Solyc12g095990.1.1	Tomato	nucleus	35.61	35.35
Solyc08g062800.2.1	Tomato	extracellular, plastid	35.37	35.11
Solyc07g040750.1.1	Tomato	cytosol	35.12	34.87
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	32.44	34.02
Solyc10g017530.2.1	Tomato	nucleus	34.88	29.12
Solyc01g094350.2.1	Tomato	nucleus	35.12	28.92
Solyc05g048850.2.1	Tomato	mitochondrion	35.12	26.82
Solyc04g082790.2.1	Tomato	plastid	29.27	24.05
Solyc10g085790.1.1	Tomato	nucleus	29.51	23.82
Solyc08g080550.1.1	Tomato	nucleus	25.12	18.8
Solyc01g079800.2.1	Tomato	plastid	20.98	18.74

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4C7N4
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g066060.2	EnsemblPlants:Solyc06g066060.2.1	UniParc:UPI0002765B9B	:	:	:

Description

No Description!

Coordinates

chr6:+:41410756..41417580

Molecular Weight (calculated)

46501.7 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.159

Length

410 amino acids

Sequence
(BLAST)

001: MMRRPQIPLM EKLTANLPRS EGYVGIHSSG FRDFLLKPEL LRAIVDSGFE HPSEVQHECI PQAILGMDVI CQAKSGMGKT AVFVLSTLQQ IEPVPGQVAA
101: LVLCHTRELA YQICHEFERF STYLPDIKVA VFYGGVNIKL HKELLKNECP HIVVGTPGRV LALARDKDLP LKNVRHFILD ECDKMLDSLD MRRDVQAIFK
201: MTPHDKQVMM FSATLSKEIR PVCKKFMQDP MEIYVDDEAK LTLHGLVQHY IKLSETEKNR KLNDLLDALD FNQVVIFVKS VNRAAELNKL LAECNFPSIC
301: IHSGMTQEER LTRYKAFKEG HKRILVATDL VGRGIDIERV NIVINYDMPD SADTYLHRVG RAGRFGTKGL AITFVSSASD SEVLNQVQER FEVDIKELPE
401: QIDTSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.