Factsheet for VIT_09s0002g06660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053566	Potato	cytosol	95.09	95.32
PGSC0003DMT400052757	Potato	cytosol	93.46	93.46
AT5G11170.1	Thale cress	cytosol	92.99	93.21
KXG22711	Sorghum	cytosol	93.22	93.01
Solyc06g066060.2.1	Tomato	nucleus	88.32	92.2
KRH47464	Soybean	nucleus	91.36	91.78
KRH44441	Soybean	cytosol, nucleus	91.36	91.78
KXG32708	Sorghum	cytosol	91.59	91.59
TraesCS1B01G477500.1	Wheat	cytosol	91.59	90.95
TraesCS1D01G451300.1	Wheat	cytosol	89.72	90.78
Bra023311.1-P	Field mustard	cytosol	89.95	90.16
TraesCS1A01G443400.1	Wheat	cytosol	91.36	90.09
TraesCS3B01G224400.1	Wheat	cytosol	89.95	89.95
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	90.65	89.81
TraesCS3D01G204400.1	Wheat	cytosol	89.72	89.72
Os01t0549700-01	Rice	cytosol, plastid	90.42	89.58
VIT_04s0008g05330.t01	Wine grape	cytosol	95.56	89.5
Bra023312.1-P	Field mustard	cytosol	90.19	88.53
GSMUA_Achr8P05380_001	Banana	cytosol	95.56	88.34
CDY51112	Canola	cytosol	90.65	88.18
CDX85725	Canola	cytosol	90.89	88.01
TraesCS3A01G200100.1	Wheat	cytosol	89.25	87.61
CDX70383	Canola	cytosol	90.89	87.02
Bra008984.1-P	Field mustard	cytosol	84.81	85.21
Solyc08g061000.2.1	Tomato	nucleus	94.86	83.71
HORVU1Hr1G095100.5	Barley	cytosol	89.95	82.09
AT5G11200.2	Thale cress	cytosol	92.99	81.89
Zm00001d009761_P004	Maize	cytosol	92.29	80.78
CDY71952	Canola	cytosol	76.87	78.9
CDX85726	Canola	cytosol	89.95	78.57
CDX78412	Canola	cytosol	91.12	78.47
CDX69778	Canola	cytosol	90.65	78.38
Bra008983.1-P	Field mustard	cytosol	86.22	78.18
CDY51111	Canola	cytosol	44.39	76.31
CDX69777	Canola	cytosol, nucleus, plasma membrane	91.12	74.57
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	84.81	72.89
Zm00001d011149_P002	Maize	cytosol	26.64	68.67
Bra006091.1-P	Field mustard	cytosol	83.64	68.32
Zm00001d011150_P005	Maize	cytosol	67.99	62.85
CDY56825	Canola	cytosol	30.37	57.02
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.84	44.15
VIT_04s0008g00990.t01	Wine grape	cytosol	11.68	40.65
VIT_04s0008g00980.t01	Wine grape	cytosol	7.71	39.29
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	34.35	35.59
VIT_11s0016g01920.t01	Wine grape	cytosol	34.35	35.59
VIT_09s0002g01760.t01	Wine grape	cytosol	34.11	33.49
VIT_06s0080g00550.t01	Wine grape	cytosol	31.54	32.53
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	34.11	30.42
VIT_15s0046g03200.t01	Wine grape	cytosol	33.88	29.53
VIT_00s2262g00010.t01	Wine grape	cytosol	16.36	28.69
VIT_08s0007g04400.t01	Wine grape	cytosol	30.84	25.73
VIT_08s0007g04430.t01	Wine grape	cytosol	16.82	23.15
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	25.0	19.21
VIT_05s0020g02870.t01	Wine grape	extracellular	18.93	16.67

Protein Annotations

EntrezGene:100268003	wikigene:100268003	MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	ProteinID:CBI36308
ProteinID:CBI36308.3	UniProt:D7U112	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596494	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100268003
wikigene:LOC100268003	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGR:TC53289	TIGR:TC65154	TIGR:TC65451	UniParc:UPI000198401F	ArrayExpress:VIT_09s0002g06660
EnsemblPlantsGene:VIT_09s0002g06660	EnsemblPlants:VIT_09s0002g06660.t01	unigene:Vvi.7744	RefSeq:XP_002268833	RefSeq:XP_002268833.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:6583374..6602408

Molecular Weight (calculated)

48357.2 Da

IEP (calculated)

5.474

GRAVY (calculated)

-0.253

Length

428 amino acids

Sequence
(BLAST)

001: MGEARDNDAY EEELLDYEEE DEKAPDSVAS KAAGESAKKG YVGIHSSGFR DFLLKPELLR SIVDSGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSTLQQIE PVAGQVAALV LCHTRELAYQ ICHEFERFST YLPDIKVAVF YGGVSIKTHK DLLKNECPHI VVGTPGRILA LARDKDLGLK HVRHFILDEC
201: DKMLESLDMR RDVQEIFKMT PHDKQVMMFS ATLSKEIRPV CKKFMQDPME IYVDDEAKLT LHGLVQHYIK LSELEKNRKL NDLLDALDFN QVVIFVKSVS
301: RAAELNKLLM ECNFPSICIH SGMPQEERLT RYKNFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD
401: VLNQVQERFE VDIKELPEQI DTSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.