Factsheet for Zm00001d011150_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32708	Sorghum	cytosol	69.98	75.7
TraesCS3B01G224400.1	Wheat	cytosol	66.09	71.5
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	66.52	71.3
TraesCS3D01G204400.1	Wheat	cytosol	65.87	71.26
Os01t0549700-01	Rice	cytosol, plastid	66.31	71.06
TraesCS3A01G200100.1	Wheat	cytosol	66.09	70.18
VIT_09s0002g06660.t01	Wine grape	cytosol	62.85	67.99
PGSC0003DMT400053566	Potato	cytosol	62.63	67.92
KRH52452	Soybean	nucleus	62.42	67.68
KRH47464	Soybean	nucleus	62.2	67.61
KRH44441	Soybean	cytosol, nucleus	62.2	67.61
KRH61783	Soybean	cytosol	62.2	67.45
AT5G11170.1	Thale cress	cytosol	61.99	67.21
Solyc06g066060.2.1	Tomato	nucleus	59.4	67.07
PGSC0003DMT400052757	Potato	cytosol	61.34	66.36
Bra023311.1-P	Field mustard	cytosol	60.91	66.04
CDY51112	Canola	cytosol	61.77	65.0
Bra023312.1-P	Field mustard	cytosol	60.91	64.68
CDX85725	Canola	cytosol	61.56	64.48
GSMUA_Achr8P05380_001	Banana	cytosol	64.36	64.36
CDX70383	Canola	cytosol	61.77	63.98
VIT_04s0008g05330.t01	Wine grape	cytosol	62.63	63.46
Zm00001d009761_P004	Maize	cytosol	66.95	63.39
Bra008984.1-P	Field mustard	cytosol	56.8	61.74
Solyc08g061000.2.1	Tomato	nucleus	63.5	60.62
AT5G11200.2	Thale cress	cytosol	62.63	59.67
CDX85726	Canola	cytosol	63.07	59.59
CDX69778	Canola	cytosol	63.07	58.99
CDX78412	Canola	cytosol	62.85	58.55
Bra008983.1-P	Field mustard	cytosol	57.67	56.57
CDY71952	Canola	cytosol	50.54	56.12
CDX69777	Canola	cytosol, nucleus, plasma membrane	63.28	56.02
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	56.37	52.41
Bra006091.1-P	Field mustard	cytosol	55.94	49.43
CDY51111	Canola	cytosol	20.73	38.55
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	18.57	28.76
CDY56825	Canola	cytosol	13.82	28.07
Zm00001d015251_P001	Maize	extracellular	22.89	25.85
Zm00001d036480_P001	Maize	plasma membrane, plastid	22.89	25.6
Zm00001d014673_P001	Maize	plastid	22.89	25.6
Zm00001d051840_P003	Maize	extracellular, mitochondrion	21.6	24.57
Zm00001d018542_P006	Maize	cytosol	21.6	22.57
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	15.33	20.88
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	22.46	20.68
Zm00001d051268_P004	Maize	extracellular	22.46	19.92
Zm00001d017384_P008	Maize	cytosol	22.46	19.81
Zm00001d027728_P001	Maize	extracellular, plasma membrane	18.36	16.87
Zm00001d011790_P001	Maize	plastid	13.61	14.09
Zm00001d016350_P001	Maize	vacuole	13.17	12.1
Zm00001d017345_P002	Maize	plastid	16.41	11.97
Zm00001d016351_P002	Maize	nucleus	20.3	10.54
Zm00001d011149_P002	Maize	cytosol	3.67	10.24

Protein Annotations

MapMan:16.11.1.3	Gene3D:3.40.50.300	UniProt:A0A1D6FX10	ProteinID:AQK95889.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0008457DF9
EnsemblPlantsGene:Zm00001d011150	EnsemblPlants:Zm00001d011150_P005	EnsemblPlants:Zm00001d011150_T005	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 56

Coordinates

chr8:-:140735619..140741566

Molecular Weight (calculated)

52430.5 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.086

Length

463 amino acids

Sequence
(BLAST)

001: MWANREAEDG GNGHSIPPRT DRFTSLFSRD LDSRASMGEA KDNEVYEEDL VDYEEEVENV IDGAPTNGSS DVVKKGYVGI HSSGFRDFLL KPELLRAIQD
101: CGFEHPSEGK IYFCSCANYA LYYHISLGCI GTKLQHECIP QAILGMDVIC QAKSGMGKTA VFVLSTLQQI DPVAGQVAAL VLCHTRELAY QICHEFERFS
201: KYLPELRVAV FYGGVHIKNH KDLLKNECPH IVVGTPGRIL ALARDKDLPL KNVRHFILDE CDKMLESLDM RRDVQEIFKM TPHDKQVMMF SATLSKEIRP
301: VCKRFMQDVM SYGLTYFNCP SSYLRLPFPR VCFICYLVPI HIPFVGDEME SSVVSINRLG ENSRIGTLIF LSIIVTLQPM EIYVDDEAKL TLHGLVQHYI
401: KLSEAEKNRK LNDLLDALDF NQVVIFVKSV SRAAELNKLL CECNFPSICI HSGMTQEERS VIY

Best Arabidopsis Sequence Match ( AT5G11170.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.