Factsheet for Zm00001d018542_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051840_P003	Maize	extracellular, mitochondrion	91.42	99.51
EES07819	Sorghum	cytosol	90.97	99.02
Os01t0639100-01	Rice	nucleus	86.0	94.31
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	85.78	94.06
TraesCS2A01G552800.1	Wheat	cytosol	75.62	90.79
GSMUA_Achr9P23810_001	Banana	cytosol	79.46	90.72
TraesCS2B01G584200.1	Wheat	mitochondrion	81.94	89.19
TraesCS6A01G416700.1	Wheat	nucleus	83.07	89.1
TraesCS6D01G401900.1	Wheat	nucleus	83.07	89.1
HORVU6Hr1G094560.1	Barley	cytosol	82.84	89.08
TraesCS2D01G554300.1	Wheat	nucleus	77.88	88.92
TraesCS6B01G472700.1	Wheat	nucleus	82.62	88.83
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	77.88	88.24
TraesCS2D01G553400.1	Wheat	cytosol	79.91	87.41
VIT_06s0080g00550.t01	Wine grape	cytosol	81.26	86.75
KRH37217	Soybean	endoplasmic reticulum	79.46	86.49
KRH12197	Soybean	nucleus	79.23	86.45
PGSC0003DMT400019783	Potato	cytosol	79.23	85.82
Bra022449.1-P	Field mustard	cytosol	77.65	84.31
CDY33416	Canola	cytosol	77.65	84.31
Bra032127.1-P	Field mustard	cytosol	77.43	84.07
CDY51692	Canola	cytosol	77.43	84.07
CDY42205	Canola	cytosol	77.43	84.07
Bra038231.1-P	Field mustard	cytosol	77.43	84.07
CDY24617	Canola	cytosol	77.43	84.07
CDY22956	Canola	cytosol	77.43	84.07
CDX82280	Canola	cytosol	77.2	83.82
AT3G19760.1	Thale cress	cytosol	76.75	83.33
GSMUA_Achr3P27120_001	Banana	cytosol	59.37	78.98
HORVU3Hr1G015500.1	Barley	cytosol	25.73	74.51
HORVU3Hr1G015460.1	Barley	cytosol	25.73	74.51
AT1G51380.1	Thale cress	cytosol	62.75	70.92
HORVU3Hr1G050890.1	Barley	cytosol	25.73	70.37
CDY58940	Canola	cytosol	64.11	70.3
Bra014267.1-P	Field mustard	cytosol	64.11	70.3
CDY03623	Canola	cytosol	63.88	70.05
CDY22577	Canola	cytosol	21.67	64.43
Zm00001d015251_P001	Maize	extracellular	57.56	62.2
Zm00001d014673_P001	Maize	plastid	58.01	62.08
Zm00001d036480_P001	Maize	plasma membrane, plastid	58.01	62.08
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	26.86	35.0
Zm00001d051268_P004	Maize	extracellular	33.86	28.74
Zm00001d017384_P008	Maize	cytosol	33.86	28.57
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	32.05	28.23
Zm00001d009761_P004	Maize	cytosol	30.93	28.02
Zm00001d027728_P001	Maize	extracellular, plasma membrane	30.7	26.98
Zm00001d011149_P002	Maize	cytosol	9.48	25.3
Zm00001d011150_P005	Maize	cytosol	22.57	21.6
Zm00001d016350_P001	Maize	vacuole	23.02	20.24
Zm00001d011790_P001	Maize	plastid	19.64	19.46
Zm00001d016351_P002	Maize	nucleus	36.57	18.16
Zm00001d017345_P002	Maize	plastid	22.8	15.91

Protein Annotations

EntrezGene:103627913	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6HQ89	ProteinID:AQK76436.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000844DB7E	EnsemblPlantsGene:Zm00001d018542	EnsemblPlants:Zm00001d018542_P006
EnsemblPlants:Zm00001d018542_T006	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 34

Coordinates

chr5:+:222667539..222670492

Molecular Weight (calculated)

50060.7 Da

IEP (calculated)

6.284

GRAVY (calculated)

-0.175

Length

443 amino acids

Sequence
(BLAST)

001: MAAPTTSRRG PGGARNMDDE NLTFETSPGV EVVSSFDQMG IKDDLLRGIY GYGFEKPSAI QQRAVLPIIN GRDVIAQAQS GTGKTSMISL TVCQIVDTAV
101: RDPGIRALPP RSEQYMVFSV YSRAELEFEL ASLLCSLRVQ ALILSPTREL ASQTERVMLA IGDHLNVQVH ACIGGKSIGE DIRRLENGVH VVSGTPGRVC
201: DMIKRRTLRT RAIKLLVLDE ADEMLSRGFK DQIYDVYRYL PPELQVVLIS ATLPHEILEM TSKFMTEPVR ILVKRDELTL EGIKQFFVAV EKEEWKFDTL
301: CDLYDTLTIT QAVIFCNTKR KVDWLTEKMR TNNFTVSAMH GDMPQQERDA IMGEFRSGAT RVLITTDVWA RGLDVQQVSL VINYDLPNNR ELYIHRIGRS
401: GRFGRKGVAI NFVRKDDIRI LRDIEQYYST QIDEMPMNVA DLI

Best Arabidopsis Sequence Match ( AT1G51380.1 )
(BLAST)

001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV

Arabidopsis Description

RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.