Factsheet for Solyc11g033280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019783	Potato	cytosol	99.74	95.35
GSMUA_Achr9P23810_001	Banana	cytosol	89.77	90.46
VIT_06s0080g00550.t01	Wine grape	cytosol	93.61	88.19
TraesCS2A01G552800.1	Wheat	cytosol	82.86	87.8
KRH12197	Soybean	nucleus	91.05	87.68
KRH37217	Soybean	endoplasmic reticulum	91.05	87.47
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	89.77	86.88
Os01t0639100-01	Rice	nucleus	89.77	86.88
Zm00001d051840_P003	Maize	extracellular, mitochondrion	88.49	85.01
EES07819	Sorghum	cytosol	88.24	84.77
AT3G19760.1	Thale cress	cytosol	87.98	84.31
CDY24617	Canola	cytosol	87.47	83.82
CDY33416	Canola	cytosol	87.47	83.82
Bra022449.1-P	Field mustard	cytosol	87.47	83.82
TraesCS2D01G554300.1	Wheat	nucleus	83.12	83.76
CDY42205	Canola	cytosol	87.21	83.58
CDY51692	Canola	cytosol	87.21	83.58
CDY22956	Canola	cytosol	87.21	83.58
Bra032127.1-P	Field mustard	cytosol	87.21	83.58
Bra038231.1-P	Field mustard	cytosol	87.21	83.58
CDX82280	Canola	cytosol	87.21	83.58
TraesCS2B01G584200.1	Wheat	mitochondrion	86.7	83.29
HORVU6Hr1G094560.1	Barley	cytosol	86.7	82.28
TraesCS6B01G472700.1	Wheat	nucleus	86.7	82.28
TraesCS6D01G401900.1	Wheat	nucleus	86.7	82.08
TraesCS6A01G416700.1	Wheat	nucleus	86.44	81.84
TraesCS2D01G553400.1	Wheat	cytosol	84.14	81.23
GSMUA_Achr3P27120_001	Banana	cytosol	68.8	80.78
Zm00001d018542_P006	Maize	cytosol	88.24	77.88
AT1G51380.1	Thale cress	cytosol	71.61	71.43
CDY58940	Canola	cytosol	72.38	70.05
Bra014267.1-P	Field mustard	cytosol	72.38	70.05
HORVU3Hr1G015460.1	Barley	cytosol	27.37	69.93
HORVU3Hr1G015500.1	Barley	cytosol	27.37	69.93
CDY03623	Canola	cytosol	72.12	69.8
HORVU3Hr1G050890.1	Barley	cytosol	27.62	66.67
CDY22577	Canola	cytosol	24.55	64.43
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	63.68	63.2
Solyc12g095990.1.1	Tomato	nucleus	63.94	60.53
Solyc08g062800.2.1	Tomato	extracellular, plastid	63.43	60.05
Solyc07g040750.1.1	Tomato	cytosol	62.66	59.32
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	62.4	59.08
Solyc06g066060.2.1	Tomato	nucleus	34.02	32.44
Solyc10g017530.2.1	Tomato	nucleus	35.81	28.51
Solyc01g094350.2.1	Tomato	nucleus	35.81	28.11
Solyc08g061000.2.1	Tomato	nucleus	34.02	27.42
Solyc05g048850.2.1	Tomato	mitochondrion	36.06	26.26
Solyc04g082790.2.1	Tomato	plastid	33.5	26.25
Solyc10g085790.1.1	Tomato	nucleus	33.76	25.98
Solyc01g079800.2.1	Tomato	plastid	25.32	21.57
Solyc08g080550.1.1	Tomato	nucleus	26.6	18.98

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4D7R1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g033280.1	EnsemblPlants:Solyc11g033280.1.1	UniParc:UPI0002769C74	:	:

Description

No Description!

Coordinates

chr11:-:26381002..26386581

Molecular Weight (calculated)

44350.8 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.170

Length

391 amino acids

Sequence
(BLAST)

001: MEEDRLVFET SKGVEPITSF AEMGIKDDLL RGIYQYGFEK PSAIQQRAVL PIISGRDVIA QAQSGTGKTS MIALTVCQVV DTKNSEVQAL ILSPTRELAA
101: QTEKVILAIG DYINIQAHAC IGGKSVGEDI RKLEHGVQVV SGTPGRVCDM IKRRTLRTRA IKLLILDESD EMLSRGFKDQ IYDVYRYLPP ELQVVLISAT
201: LPNEILEITS KFMTDPVRIL VKRDELTLEG IKQFFVAVER EEWKFDTLCD LYDTLTITQA VIFCNTKRKV DWLTNKMREN NFTVSSMHGD MPQKERDAIM
301: AEFRGGTTRV LITTDVWARG LDVQQVSLVI NYDLPNNREL YIHRIGRSGR FGRKGVAINF VKTDDIKILR DIEQYYSTQI DEMPMNVADL I

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.