Factsheet for HORVU6Hr1G094560.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G401900.1	Wheat	nucleus	99.27	99.03
TraesCS6A01G416700.1	Wheat	nucleus	99.03	98.79
TraesCS6B01G472700.1	Wheat	nucleus	98.54	98.54
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	88.83	90.59
Os01t0639100-01	Rice	nucleus	88.83	90.59
Zm00001d051840_P003	Maize	extracellular, mitochondrion	89.08	90.17
EES07819	Sorghum	cytosol	88.83	89.93
GSMUA_Achr9P23810_001	Banana	cytosol	83.5	88.66
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	82.28	86.7
PGSC0003DMT400019783	Potato	cytosol	83.98	84.6
VIT_06s0080g00550.t01	Wine grape	cytosol	84.71	84.1
KRH12197	Soybean	nucleus	82.77	83.99
KRH37217	Soybean	endoplasmic reticulum	82.77	83.78
HORVU3Hr1G015460.1	Barley	cytosol	31.07	83.66
HORVU3Hr1G015500.1	Barley	cytosol	31.07	83.66
Zm00001d018542_P006	Maize	cytosol	89.08	82.84
AT3G19760.1	Thale cress	cytosol	81.31	82.11
Bra022449.1-P	Field mustard	cytosol	81.31	82.11
CDY33416	Canola	cytosol	81.31	82.11
CDY51692	Canola	cytosol	81.07	81.86
Bra032127.1-P	Field mustard	cytosol	81.07	81.86
CDY42205	Canola	cytosol	81.07	81.86
Bra038231.1-P	Field mustard	cytosol	81.07	81.86
CDY22956	Canola	cytosol	81.07	81.86
CDY24617	Canola	cytosol	81.07	81.86
CDX82280	Canola	cytosol	80.83	81.62
HORVU3Hr1G050890.1	Barley	cytosol	30.83	78.4
GSMUA_Achr3P27120_001	Banana	cytosol	62.14	76.88
CDY03623	Canola	cytosol	68.2	69.55
Bra014267.1-P	Field mustard	cytosol	68.2	69.55
CDY58940	Canola	cytosol	68.2	69.55
AT1G51380.1	Thale cress	cytosol	65.78	69.13
CDY22577	Canola	cytosol	23.54	65.1
HORVU6Hr1G020910.1	Barley	cytosol	62.62	51.09
HORVU1Hr1G095100.5	Barley	cytosol	32.28	28.36
HORVU6Hr1G060630.1	Barley	cytosol	35.19	27.99
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	42.23	27.19
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	32.77	26.68
HORVU1Hr1G046020.1	Barley	cytosol	33.98	24.82
HORVU3Hr1G114220.3	Barley	plastid	21.6	17.98
HORVU6Hr1G059910.1	Barley	mitochondrion	25.49	17.47

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EMBL:AK364051	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F2DJI3	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:HORVU6Hr1G094560	EnsemblPlants:HORVU6Hr1G094560.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000200659A	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DJI3]

Coordinates

chrchr6H:-:581420812..581426005

Molecular Weight (calculated)

46177.8 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.163

Length

412 amino acids

Sequence
(BLAST)

001: MAAAAGGATT STRRGPGGGR PMDDENLTFE TSAGVEVVGS FDAMGIREDL LRGIYDYGFE KPSAIQQRAV IPIITGRDVI AQAQSGTGKT SMISLSVCQV
101: IETNVHEVQA LILSPTRELA TQTERVMQAV GSFMSVSVHA CVGGKSIGED IRKLESGVHV VSGTPGRVCD MIKRRTLRTR AIKLLVLDEA DEMLSRGFKD
201: QIYDVYRYLP PELQVVLISA TLPHDILEIT SKFMTDPVRI LVKRDELTLE GIKQFFVAVE KEEWKFDTLC DLYDTLTITQ AVIFCNTKRK VDWLTERMRT
301: NNFTVSAMHG DMPQKERDAI MNEFRGGTTR VLITTDVWAR GLDVQQVSLV INYDLPNNRE LYIHRIGRSG RFGRKGVAIN FVRKDDIRIL RDIEQYYSTQ
401: IDEMPMNVAD LI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.