Factsheet for HORVU7Hr1G073770.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G086240.1
HORVU6Hr1G023180.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72730.1	HORVU2Hr1G086240.1	AT5G57870.1	21798944
AT1G72730.1	HORVU6Hr1G023180.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G217800.1	Wheat	cytosol	53.59	81.47
TraesCS6A01G186600.1	Wheat	cytosol	67.97	79.09
VIT_04s0008g00990.t01	Wine grape	cytosol	11.41	59.35
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	35.78	58.12
PGSC0003DMT400075339	Potato	cytosol	36.56	56.66
Solyc12g095990.1.1	Tomato	nucleus	36.56	56.66
PGSC0003DMT400075336	Potato	cytosol	36.09	56.34
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	36.09	55.93
PGSC0003DMT400021166	Potato	cytosol	36.09	55.93
Solyc08g062800.2.1	Tomato	extracellular, plastid	36.09	55.93
Solyc07g040750.1.1	Tomato	cytosol	36.09	55.93
Bra021517.1-P	Field mustard	cytosol	35.78	55.58
CDY39079	Canola	cytosol	35.78	55.58
KRH52210	Soybean	cytosol, endoplasmic reticulum	35.78	55.45
Bra027387.1-P	Field mustard	cytosol	35.62	55.34
CDY08220	Canola	cytosol	35.47	55.1
AT1G54270.1	Thale cress	cytosol	35.47	55.1
Bra014365.1-P	Field mustard	cytosol	35.47	55.1
CDY10607	Canola	cytosol	35.16	54.74
Bra030893.1-P	Field mustard	cytosol	35.16	54.61
CDY02469	Canola	cytosol	35.16	54.61
Bra001530.1-P	Field mustard	cytosol	35.47	54.57
CDY32586	Canola	cytosol	31.88	53.97
Bra029124.1-P	Field mustard	cytosol	34.53	53.9
AT1G72730.1	Thale cress	cytosol	34.69	53.62
Bra037977.1-P	Field mustard	cytosol	34.06	52.91
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.16	52.69
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.16	52.69
CDY24057	Canola	cytosol	33.91	52.67
CDY67069	Canola	cytosol	8.28	52.48
CDY33073	Canola	cytosol	33.75	52.43
VIT_04s0008g00980.t01	Wine grape	cytosol	6.72	51.19
CDY72259	Canola	cytosol	17.66	50.9
CDY55205	Canola	cytosol	33.59	50.83
AT3G13920.5	Thale cress	cytosol	33.12	50.6
CDX97528	Canola	cytosol	33.28	50.12
CDX82505	Canola	cytosol	33.12	49.53
CDX75739	Canola	cytosol	33.28	48.85
CDY11154	Canola	cytosol	15.0	47.52
HORVU6Hr1G020910.1	Barley	cytosol	36.41	46.14
TraesCS6A01G186800.1	Wheat	cytosol	84.53	42.46
HORVU6Hr1G094560.1	Barley	cytosol	27.19	42.23
CDY54037	Canola	cytosol	17.19	41.2
TraesCS6D01G173700.3	Wheat	cytosol	85.47	40.7
GSMUA_Achr9P13950_001	Banana	mitochondrion	19.22	40.07
CDY53867	Canola	cytosol	26.25	39.81
TraesCS6B01G217700.1	Wheat	cytosol	82.81	39.7
HORVU3Hr1G015500.1	Barley	cytosol	9.06	37.91
HORVU3Hr1G015460.1	Barley	cytosol	9.06	37.91
HORVU3Hr1G050890.1	Barley	cytosol	9.38	37.04
CDX72939	Canola	mitochondrion, nucleus	26.25	36.05
Os02t0221300-01	Rice	cytosol	49.22	35.75
OQU84655	Sorghum	cytosol	39.53	33.07
Bra016037.1-P	Field mustard	cytosol	35.0	30.81
Zm00001d016351_P002	Maize	nucleus	40.62	29.15
KXG29825	Sorghum	cytosol	39.22	28.46
Zm00001d016350_P001	Maize	vacuole	21.56	27.38
HORVU1Hr1G095100.5	Barley	cytosol	18.91	25.8
HORVU6Hr1G060630.1	Barley	cytosol	19.69	24.32
CDY68148	Canola	nucleus	26.41	22.87
HORVU1Hr1G046020.1	Barley	cytosol	19.22	21.81
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	16.25	20.55
HORVU3Hr1G114220.3	Barley	plastid	13.44	17.37
HORVU6Hr1G059910.1	Barley	mitochondrion	13.12	13.98
CDY49860	Canola	cytosol	2.34	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287WW08	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU7Hr1G073770	EnsemblPlants:HORVU7Hr1G073770.1	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF534
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B462F60	SEG:seg

Description

No Description!

Coordinates

chrchr7H:+:420059128..420062652

Molecular Weight (calculated)

70110.6 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.390

Length

640 amino acids

Sequence
(BLAST)

001: AGGYHLLGLE DCSDKERQKK LKTCDMATFL QASKCTEELR IDGEIKENNA SAIVGTRTNS ERATEDIPKA TEDMATLLQV SKFTEELRTD GEIKENSASA
101: IVGTRTNSER ATEDIPKAEG GQSICGSMDK PAIKNVYTRR NRKQKESTEG STLFAHINSD STCEGIQKPP IKNAYEGSDP KQKGYTGGQV ASMELNKAMN
201: PGSSSHADCT RNKTEAKTLG AEGAQSIKGS SACMIRVTRS KGVDEAGTTL QGDRLTQFYE EFNTYNEIYD SFVEMGLREN LLKGIYAYGL EKPSAVHQRG
301: IVPLCKGLDV IQQSLSGTTV TLACGVLQRL NYGSTECQAL ILVPTRDLAQ ETEKVIGALG QWLGVKAHAC LGGTSIRGDK QSLSNSTQVI VATPSRALDM
401: LRGQALCPDN IRMFVLDQAD ETLAGGLKNQ IYDIIQLLPA KIQFAVFSTV MSHEALELCR KCMNKPMKVI VPKDEELESF SIKQFYVKAE EEELKFEKLC
501: DLFDTMAVKQ NIIFVDARQK VKSLTEKIRG RGYTVSASHG GMNQHERDVA VQDLRSGSSL VLVTTDLRGA DTLQVPVVIN YDLPTQAIQY IRHVRRSGQP
601: GGNGVAISFI APADRRVLSD IQRFCNAQME ELPSNVADLL

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.