Factsheet for HORVU6Hr1G023180.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU4Hr1G024710.4
HORVU5Hr1G048010.1
HORVU6Hr1G019700.3
HORVU6Hr1G031450.6
HORVU7Hr1G073770.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	HORVU6Hr1G019700.3	AT1G27360.1	21798944
AT2G24050.1	HORVU6Hr1G031450.6	AT1G27360.1	21798944
AT2G24050.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT2G24050.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944
AT2G24050.1	HORVU1Hr1G039260.2	AT5G35620.1	21798944
AT5G57870.1	HORVU7Hr1G073770.1	AT1G72730.1	21798944
AT5G57870.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT5G57870.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05970_001	Banana	cytosol	19.66	38.41
AT4G30680.1	Thale cress	mitochondrion, plastid	28.47	31.94
HORVU2Hr1G086240.1	Barley	cytosol	63.05	24.7
EES12452	Sorghum	cytosol	53.22	19.85
CDY28203	Canola	cytosol	34.24	19.77
Zm00001d003147_P001	Maize	plastid	51.86	19.47
Zm00001d025777_P007	Maize	plastid	51.19	19.24
Os04t0499300-01	Rice	plastid	51.19	18.73
Bra011218.1-P	Field mustard	plastid	34.58	18.65
GSMUA_Achr9P22750_001	Banana	plastid	42.37	16.8
GSMUA_AchrUn_...	Banana	cytosol	41.02	16.22
VIT_11s0037g00490.t01	Wine grape	plastid	41.02	15.24
CDY39236	Canola	cytosol	37.97	15.16
AT2G24050.1	Thale cress	plastid	38.31	15.13
Bra024051.1-P	Field mustard	cytosol	38.31	15.11
KRH72326	Soybean	endoplasmic reticulum	39.66	14.92
CDX72262	Canola	cytosol	37.29	14.75
KRH55033	Soybean	endoplasmic reticulum	38.64	14.71
AT5G57870.1	Thale cress	plastid	38.64	14.62
CDX68687	Canola	plastid	36.95	14.57
Bra011211.1-P	Field mustard	plastid	36.95	14.55
KRH63081	Soybean	endoplasmic reticulum	37.97	14.47
KRH03030	Soybean	endoplasmic reticulum	38.31	14.32
Solyc07g005810.2.1	Tomato	plastid	36.61	13.97
CDY32742	Canola	plastid	35.93	13.77
Bra020407.1-P	Field mustard	plastid	35.93	13.77
PGSC0003DMT400020464	Potato	cytosol	35.93	13.71
CDY02774	Canola	plastid	35.59	13.6
PGSC0003DMT400029102	Potato	cytosol, plastid	35.93	13.59
Solyc12g009960.1.1	Tomato	nucleus	35.25	13.45
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	38.31	12.8
GSMUA_Achr3P28040_001	Banana	cytosol	18.64	12.2
GSMUA_Achr4P05990_001	Banana	cytosol	5.42	10.88
GSMUA_Achr4P12750_001	Banana	cytosol	40.34	10.26
GSMUA_Achr4P06000_001	Banana	cytosol	1.36	9.76
CDY28211	Canola	mitochondrion	10.85	6.78
Solyc07g005780.1.1	Tomato	cytosol	9.83	6.44
AT1G62410.1	Thale cress	cytosol	4.75	6.28
CDY69274	Canola	cytosol, mitochondrion	6.44	5.81
HORVU2Hr1G092940.7	Barley	nucleus	19.66	3.25
HORVU2Hr1G041760.1	Barley	nucleus	18.31	2.96
HORVU2Hr1G041770.2	Barley	nucleus	18.31	2.89

Protein Annotations

EnsemblPlants:HORVU6Hr1G023180.1	EnsemblPlantsGene:HORVU6Hr1G023180	Gene3D:1.25.40.180	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold
InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
PFAM:PF02847	PFscan:PS51366	SEG:seg	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI000B469D1A
UniProt:A0A287TLB9	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:75728163..75731421

Molecular Weight (calculated)

31828.5 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.215

Length

295 amino acids

Sequence
(BLAST)

001: MMRGMPGSRK MPRMPGLHND NWEVQRSKSM PRGDPLRNQG PLINKISSSI NKPSPINPRL LPQGTGALIG KSALLGTGGP PSRPPTLTAS PTPLASQTTS
101: SPKPSSGTPA SVHVPDKATS SAKVVSAGLQ KKTTSLLDDY FGIRILDEAQ QCIEELQCPD YHPEIVKEAI NLALDKGASF VDPLVKLLEH LYTKKTFKTE
201: DLENGCLLYG SLLEDIGIDL LKAPTQFGEV VAHCLLLYGG LRFEAVEGIL KAMEDTFFRK EIFNSMTKTL EANPAGQAIL SSHDAIVEAC NSLLI

Best Arabidopsis Sequence Match ( AT2G24050.1 )
(BLAST)

001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL

Arabidopsis Description

EIF(ISO)4G2Eukaryotic translation initiation factor isoform 4G-2 [Source:UniProtKB/Swiss-Prot;Acc:O82233]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.