Factsheet for Os04t0499300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0139400-01
Os02t0174100-02
Os02t0221300-01
Os06t0663500-00
Os06t0703500-02
Os10t0467600-01
Os11t0104866-00
Os11t0104900-00
Os12t0104766-00
Os12t0104800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Os02t0139400-01	AT1G27360.1	21798944
AT2G24050.1	Os02t0174100-02	AT1G27360.1	21798944
AT2G24050.1	Os06t0663500-00	AT1G27360.1	21798944
AT2G24050.1	Os06t0703500-02	AT1G27360.1	21798944
AT2G24050.1	Os11t0104866-00	AT3G08530.1	21798944
AT2G24050.1	Os11t0104900-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104766-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104800-01	AT3G08530.1	21798944
AT2G24050.1	Os10t0467600-01	AT5G35620.1	21798944
AT5G57870.1	Os02t0221300-01	AT1G72730.1	21798944
AT5G57870.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G57870.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104800-01	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12452	Sorghum	cytosol	76.55	78.0
Zm00001d025777_P007	Maize	plastid	75.43	77.45
Zm00001d003147_P001	Maize	plastid	75.06	76.97
TraesCS2B01G373600.1	Wheat	cytosol	74.44	76.05
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	74.07	75.76
TraesCS2A01G354900.1	Wheat	cytosol	74.07	75.57
GSMUA_Achr4P06000_001	Banana	cytosol	3.6	70.73
Os02t0611500-01	Rice	cytosol	64.89	67.05
GSMUA_Achr4P05990_001	Banana	cytosol	11.17	61.22
VIT_11s0037g00490.t01	Wine grape	plastid	59.43	60.33
CDY69274	Canola	cytosol, mitochondrion	24.44	60.24
KRH55033	Soybean	endoplasmic reticulum	56.82	59.1
GSMUA_Achr9P22750_001	Banana	plastid	54.22	58.74
CDY28211	Canola	mitochondrion	34.37	58.69
KRH03030	Soybean	endoplasmic reticulum	57.44	58.68
KRH72326	Soybean	endoplasmic reticulum	57.07	58.67
Solyc07g005810.2.1	Tomato	plastid	56.2	58.6
GSMUA_AchrUn_...	Banana	cytosol	54.22	58.58
Solyc12g009960.1.1	Tomato	nucleus	55.96	58.34
KRH63081	Soybean	endoplasmic reticulum	55.83	58.14
PGSC0003DMT400020464	Potato	cytosol	55.58	57.96
PGSC0003DMT400029102	Potato	cytosol, plastid	56.08	57.95
Bra024051.1-P	Field mustard	cytosol	50.87	54.81
CDY28203	Canola	cytosol	34.49	54.4
CDY39236	Canola	cytosol	49.88	54.4
AT5G57870.1	Thale cress	plastid	52.36	54.1
CDX72262	Canola	cytosol	49.26	53.22
Bra011218.1-P	Field mustard	plastid	36.1	53.2
CDX68687	Canola	plastid	49.26	53.07
Bra011211.1-P	Field mustard	plastid	49.26	53.0
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.06	53.0
Bra020407.1-P	Field mustard	plastid	50.5	52.86
CDY32742	Canola	plastid	50.5	52.86
CDY02774	Canola	plastid	49.63	51.81
AT2G24050.1	Thale cress	plastid	47.77	51.54
HORVU6Hr1G023180.1	Barley	cytosol	18.73	51.19
GSMUA_Achr3P28040_001	Banana	cytosol	28.16	50.33
Solyc07g005780.1.1	Tomato	cytosol	23.82	42.67
GSMUA_Achr4P05970_001	Banana	cytosol	7.94	42.38
AT1G62410.1	Thale cress	cytosol	11.66	42.15
GSMUA_Achr4P12750_001	Banana	cytosol	58.68	40.78
AT4G30680.1	Thale cress	mitochondrion, plastid	12.66	38.78
Os06t0520600-01	Rice	extracellular	21.96	24.89
Os06t0519400-01	Rice	nucleus	5.09	14.7
Os07t0555200-01	Rice	nucleus, plastid	6.08	3.78

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	UniProt:A0A0P0WC18	InterPro:ARM-type_fold	ProteinID:BAS89920.1	ProteinID:BAS89921.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006221	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0006810
GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009987	GO:GO:0019538
GO:GO:0045747	GO:GO:0046740	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	EnsemblPlantsGene:Os04g0499300	EnsemblPlants:Os04t0499300-01	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366
PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0000DD9163
SEG:seg	:	:	:	:	:

Description

RESISTANCE TO YELLOW MOTTLE VIRUS-1MIF4-like, type 1/2/3 domain containing protein. (Os04t0499300-01);Similar to Eukaryotic initiation factor-like protein. (Os04t0499300-02)

Coordinates

chr4:-:24946171..24952278

Molecular Weight (calculated)

88497.4 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.447

Length

806 amino acids

Sequence
(BLAST)

001: SSTPPLPLPP PPPLLPSQTQ PSLAEEGEGK RGFDFSAISP RIPPPTASGS GDLLRSHVGG ASKIGDPNFE VRERVRYTRD QLLELREIVD IPEAILRINQ
101: EIDIELHGED QIWGRPESDV QVQTQTQAQP HNRYGETDNR DWRARTVQPP AANEEKSWDN IREAKAAHAS SGRQQEQVNR QDQLNHQFAS KAQVGPTPAL
201: IKAEVPWSAR RGNLSEKDRV LKTVKGILNK LTPEKFDLLK GQLMESGITT ADILKDVISL IFEKAVFEPT FCPMYAQLCS DLNEKLPSFP SEEPGGKEIT
301: FKRVLLNNCQ EAFEGAESLR AEIAKLTGPD QEMERRDKER IVKLRTLGNI RLIGELLKQK MVPEKIVHHI VQELLGSGPD KKACPEEENV EAICQFFNTI
401: GKQLDENPKS RRINDTYFIQ MKELTTNLQL APRLRFMVRD VVDLRSNNWV PRREEIKAKT ISEIHDEAMK TLGLRPGATG LTRNGRNAPG GPLSPGGFPM
501: NRPGTGGMMP GMPGTPGMPG SRKMPGMPGL DNDNWEVPRS KSMPRGDSLR NQGPLLNKPS SINKPSSINS RLLPHGSGAL IGKSALLGSG GPPSRPSSLM
601: ASLTHTPAQT APSPKPVSAA PAVVPVTDKA AGSSHEMPAA VQKKTVSLLE EYFGIRILDE AQQCIEELQC PEYYSEIVKE AINLALDKGP NFIDPLVRLL
701: EHLHAKKIFK TEDLKTGCLL YAALLEDIGI DLPLAPALFG EVVARLSLSC GLSFEVVEEI LKAVEDTYFR KGIFDAVMKT MGGNSSGQAI LSSHAVVIDA
801: CNKLLK

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.