Factsheet for Solyc07g005780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc05g052510.2.1
Solyc06g051310.2.1
Solyc07g040750.1.1
Solyc09g090580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc09g090580.2.1	AT5G35620.1	21798944
AT5G57870.1	Solyc07g040750.1.1	AT1G72730.1	21798944
AT5G57870.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc06g051310.2.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69274	Canola	cytosol, mitochondrion	32.0	44.04
GSMUA_Achr4P05990_001	Banana	cytosol	14.22	43.54
GSMUA_Achr4P06000_001	Banana	cytosol	3.78	41.46
CDY28211	Canola	mitochondrion	40.22	38.35
AT1G62410.1	Thale cress	cytosol	17.56	35.43
GSMUA_Achr3P28040_001	Banana	cytosol	32.67	32.59
Solyc07g005810.2.1	Tomato	plastid	52.22	30.4
Solyc12g009960.1.1	Tomato	nucleus	50.67	29.5
KRH03030	Soybean	endoplasmic reticulum	49.78	28.39
Bra011218.1-P	Field mustard	plastid	34.44	28.34
KRH72326	Soybean	endoplasmic reticulum	49.33	28.32
KRH55033	Soybean	endoplasmic reticulum	47.78	27.74
VIT_11s0037g00490.t01	Wine grape	plastid	48.89	27.71
KRH63081	Soybean	endoplasmic reticulum	47.11	27.39
GSMUA_AchrUn_...	Banana	cytosol	44.44	26.81
GSMUA_Achr9P22750_001	Banana	plastid	44.0	26.61
AT5G57870.1	Thale cress	plastid	44.67	25.77
CDY32742	Canola	plastid	44.0	25.71
Bra020407.1-P	Field mustard	plastid	43.78	25.58
CDY02774	Canola	plastid	43.33	25.26
Zm00001d003147_P001	Maize	plastid	44.0	25.19
Zm00001d025777_P007	Maize	plastid	43.78	25.1
CDX68687	Canola	plastid	41.56	25.0
HORVU2Hr1G086240.1	Barley	cytosol	41.78	24.97
Os02t0611500-01	Rice	cytosol	43.11	24.87
Bra011211.1-P	Field mustard	plastid	41.33	24.83
EES12452	Sorghum	cytosol	43.56	24.78
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	42.22	24.11
TraesCS2B01G373600.1	Wheat	cytosol	42.22	24.08
TraesCS2A01G354900.1	Wheat	cytosol	42.22	24.05
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	47.11	24.01
CDY39236	Canola	cytosol	39.33	23.95
AT2G24050.1	Thale cress	plastid	39.56	23.83
Os04t0499300-01	Rice	plastid	42.67	23.82
Bra024051.1-P	Field mustard	cytosol	39.56	23.8
CDX72262	Canola	cytosol	39.33	23.73
CDY28203	Canola	cytosol	21.56	18.98
GSMUA_Achr4P12750_001	Banana	cytosol	43.11	16.72
Os06t0520600-01	Rice	extracellular	24.0	15.19
HORVU6Hr1G023180.1	Barley	cytosol	6.44	9.83
AT4G30680.1	Thale cress	mitochondrion, plastid	4.0	6.84
Solyc08g077700.2.1	Tomato	nucleus	21.33	5.83
Solyc01g088700.2.1	Tomato	nucleus	22.89	5.71
GSMUA_Achr4P05970_001	Banana	cytosol	1.11	3.31

Protein Annotations

EnsemblPlants:Solyc07g005780.1.1	EnsemblPlantsGene:Solyc07g005780.1	Gene3D:1.25.40.180	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	InterPro:ARM-type_fold	InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PANTHER:PTHR23253	PANTHER:PTHR23253:SF48	PFAM:PF02854	SMART:SM00543	SUPFAM:SSF48371	UniParc:UPI000276C19E
UniProt:K4CB49	MapMan:17.4.2.4.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:634128..638477

Molecular Weight (calculated)

51509.1 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.291

Length

450 amino acids

Sequence
(BLAST)

001: MEPIGQVKTA NFEEQEVEAE LFGENASRHH VDTKTTGDSR FEGCERVRYT RDQLLQLRNN ILKLKLEVEA DTMILQYGAN EQIILESVYI ICQILDHYST
101: ILFRVSDFVV NISDHILKIK QEIEVELFGD QTQSRRSEPD INDQLSKLEF SAPVDDRSLD PLRENSEFGD RFYSRKQEVD EFDVQEQLSS QGGAASTLIK
201: AELPCSTARR SKNCVLKTVK GMLNNPTLKK LVLLKRQLID SGITSTDTLK GVVFLVFDNA VLEPTFCPLY AQLCCDLNEM LPSLLCNEPG GESTTFKCVL
301: WNNCQEAIEG TYKLREEMRQ MIAPEHDSER MDKEKFIRSR TLGSIRLIGE LFKLNMVPKW IIHSIVLELL VQNPKCCPPE ENVEAICLLF NNIGKVVDER
401: PDSRNINNLY FGSLKRLSTN PQLAPRLRFM VCDLLDLRAN NWIPKPLLIL

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.