Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004341 | Potato | nucleus | 94.52 | 94.41 |
| GSMUA_Achr2P18290_001 | Banana | cytosol | 22.77 | 62.46 |
| GSMUA_Achr11P... | Banana | cytosol | 10.08 | 54.98 |
| VIT_15s0021g00980.t01 | Wine grape | nucleus | 49.86 | 52.57 |
| KRH66436 | Soybean | endoplasmic reticulum | 46.37 | 50.18 |
| KRH48862 | Soybean | nucleus | 45.87 | 49.46 |
| KRH46542 | Soybean | nucleus | 48.03 | 47.2 |
| KRH75579 | Soybean | endoplasmic reticulum | 47.37 | 46.93 |
| GSMUA_Achr11P... | Banana | nucleus | 40.33 | 43.96 |
| GSMUA_Achr11P... | Banana | nucleus | 38.34 | 43.06 |
| GSMUA_Achr8P14940_001 | Banana | plastid | 41.27 | 38.32 |
| TraesCS2B01G235100.1 | Wheat | golgi | 39.28 | 37.81 |
| TraesCS2D01G215300.1 | Wheat | nucleus | 39.22 | 37.8 |
| TraesCS2A01G209100.1 | Wheat | nucleus | 39.28 | 37.79 |
| HORVU2Hr1G041760.1 | Barley | nucleus | 38.17 | 37.75 |
| HORVU2Hr1G041770.2 | Barley | nucleus | 37.67 | 36.36 |
| Solyc08g077700.2.1 | Tomato | nucleus | 31.02 | 33.98 |
| TraesCS2B01G408800.1 | Wheat | nucleus | 32.47 | 32.85 |
| TraesCS2A01G390600.1 | Wheat | nucleus, plastid | 32.3 | 32.72 |
| HORVU2Hr1G092940.7 | Barley | nucleus | 32.3 | 32.7 |
| TraesCS2D01G388100.1 | Wheat | nucleus | 32.19 | 32.62 |
| KXG36457 | Sorghum | cytosol | 32.85 | 32.39 |
| KXG26815 | Sorghum | nucleus | 32.58 | 31.84 |
| Zm00001d021741_P001 | Maize | nucleus | 31.97 | 31.69 |
| Zm00001d006573_P002 | Maize | cytosol | 32.19 | 31.66 |
| Zm00001d025979_P007 | Maize | nucleus | 31.19 | 30.93 |
| Solyc07g005810.2.1 | Tomato | plastid | 10.47 | 24.45 |
| Solyc12g009960.1.1 | Tomato | nucleus | 10.3 | 24.06 |
| Solyc07g005780.1.1 | Tomato | cytosol | 5.71 | 22.89 |
| Os07t0555200-01 | Rice | nucleus, plastid | 12.85 | 17.9 |
Protein Annotations
| Gene3D:1.25.40.180 | MapMan:17.4.2.3.2 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003891 | InterPro:IPR016021 | InterPro:Initiation_fac_eIF4g_MI |
| UniProt:K4AYR0 | InterPro:MIF4-like_sf | InterPro:MIF4G-like_typ-3 | PFAM:PF02847 | PFAM:PF02854 | PFscan:PS51366 |
| PANTHER:PTHR23253 | PANTHER:PTHR23253:SF9 | SMART:SM00543 | SMART:SM00544 | SUPFAM:SSF48371 | EnsemblPlantsGene:Solyc01g088700.2 |
| EnsemblPlants:Solyc01g088700.2.1 | UniParc:UPI0002761B49 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:-:83447245..83454808
Molecular Weight (calculated)
195666.0 Da
IEP (calculated)
7.265
GRAVY (calculated)
-0.720
Length
1805 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSHNQSRADT RESSQYRRTA RSGSFNQHRG GRGSGGGGGG AAPPPVSSTS NPSLTSNRSF NKKYYNAQGG QPRVSGVGAG SDSHLNGAHQ QQPSHGVSDV
0101: SVAIAHTPLP SATVKPTDAS TQKVTRAVPR APTSNVVPPI SESSAPVTPA KNPGDASKSF PLQFGSISPG VMNVLQIPAR TSSAPPNLDE QKRAQARGDT
0201: SRAIPSLPNP STSKQPMPRK DAGPLNQSNH SEAYGVANKP KRDVHILAPP PVTQTQKPST HPMPGMHMQI PFHQPPQVPV QFGGPGPQIP SHSMSATSLP
0301: MPMHLPIVNP PMQQPMFVSN LQPHPMQSQG MMHQGQGLNF SSGIGAQLPQ QLGNMGMNMP SQFSPQQAGK FLGQRKSVKI THPETHEELR LEERSHPNMP
0401: PQSQPIASYS PSHPNYYPNS YNSNSVYFQA PSSIPLSNTQ SSQPPRPFNQ VTVKPAAGGI HSGKEQLPSV SSSFGKDPVR LSKPCGGDSA HSQKDANTSH
0501: QSSTTQSRTG DGSKSSSRPV ENIQSTKGAD SISGKSSAAG ILSLTSQAPI ESSTSLIRDS SVDAASETLG GPDSTEDQKK KQVTRGQLTV QDKALGKCTS
0601: VSIQTPQYPL TTLVEVNTAA SVSTAVNTRE SLSLSESAEL RSHITGNCGK EDLSEPLDSR NQDAGKPVLK TGDRNEVALS KAGKQDENNS LKPPSESLPV
0701: ESPEVSGLTE GGSPKRAAYA NIENGRPEIG VEHMNESVAC STGVDSIADS FTSSTSNQDS TNTEACTSAI GLSAQDDQES DIADPEEAPV TKSVDASQEF
0801: ASDLLKSSDE ATSKSEDENT ETSNAGLVSK SSSGVKEKSL VDSNVPKVTM SRGKKKKKDL YKKADAAGAT SDLYMAYKGP EKKDELSQSI ETIELTSKDD
0901: SMPPSANVHQ EDLRSTKKVG EVKAEPDDWE DAADVSTPKL EIAPEHRKVD GEDGDGVTTK KYSRDFLLKF AEQCIDIPEG FNVAPDVADI LINFNASAMR
1001: EPFPSPGRGT DRPSSGHRER RGSGVGDGDK WNKMPGPPMP GRDFQPDIGF GGNGVGFRPG PGGNSGVLRH PRGAMPIQYA MGQYAVGQYA MGQLATGGIL
1101: SGPMQSMGPP QGGGLRNGVD ADRWQRGTAF QKGLMPSPHT PAQNMHKAEV KYEVGKVTDE EQAKQRQLKA ILNKLTPQNF DKLFQQVKEV NIDNYVTLKG
1201: VISQIFDKAL MEPTFCEMYA NFCQHLAAEL PDLSVDNEKI TFKRLLLNKC QEEFERGERE ELEANVTNEE GEVKLSAEER EEKRVKARRR MLGNIRLIGE
1301: LYKKKMLTER IMHECIKKLL GDYQNPDEEN VEALCKLMST IGEMIDHAKA KEHMDAYFDM LEKLSNNMKL SSRVRFMLKD SIDLRKNKWQ QRRKVEGPKK
1401: IEEVHRDAAQ ERHAQATRLA RTPSLGGSSR RGQPMDFVPR GGGMLSSPGS QMGGFRPMSP QVRGYGMQDV RVDERHSFEN RTLSLPLTQR PLGDDPITLG
1501: PQGGLAKGMS SRGQPAGPSI DNMSSFGDSR RMVHAQSGYG SLSERPLYGL REELAPKYMP ERLSSQHDQS SAPERNVTYG NKERGFDTSR PPSPLVRSGG
1601: ATSTQNVAPD RIWPEERLLE MSMAAIKEFY SAKDEKEVAL CVKDLNSPGF YPSMISLWVT DSFERKDMER DLLAKLIIGL TLSRDVAISQ DQLIKGFENV
1701: LTSLEDAVND APRAAEFLGR IFGKVISENV IPFNEIGSLI YKGGEEEGRL VEIGLAAEVL GSTLEMIKVE QGDSAVSEIC RSSTMRLENF RPQGSKKQWK
1801: LDKFI
0101: SVAIAHTPLP SATVKPTDAS TQKVTRAVPR APTSNVVPPI SESSAPVTPA KNPGDASKSF PLQFGSISPG VMNVLQIPAR TSSAPPNLDE QKRAQARGDT
0201: SRAIPSLPNP STSKQPMPRK DAGPLNQSNH SEAYGVANKP KRDVHILAPP PVTQTQKPST HPMPGMHMQI PFHQPPQVPV QFGGPGPQIP SHSMSATSLP
0301: MPMHLPIVNP PMQQPMFVSN LQPHPMQSQG MMHQGQGLNF SSGIGAQLPQ QLGNMGMNMP SQFSPQQAGK FLGQRKSVKI THPETHEELR LEERSHPNMP
0401: PQSQPIASYS PSHPNYYPNS YNSNSVYFQA PSSIPLSNTQ SSQPPRPFNQ VTVKPAAGGI HSGKEQLPSV SSSFGKDPVR LSKPCGGDSA HSQKDANTSH
0501: QSSTTQSRTG DGSKSSSRPV ENIQSTKGAD SISGKSSAAG ILSLTSQAPI ESSTSLIRDS SVDAASETLG GPDSTEDQKK KQVTRGQLTV QDKALGKCTS
0601: VSIQTPQYPL TTLVEVNTAA SVSTAVNTRE SLSLSESAEL RSHITGNCGK EDLSEPLDSR NQDAGKPVLK TGDRNEVALS KAGKQDENNS LKPPSESLPV
0701: ESPEVSGLTE GGSPKRAAYA NIENGRPEIG VEHMNESVAC STGVDSIADS FTSSTSNQDS TNTEACTSAI GLSAQDDQES DIADPEEAPV TKSVDASQEF
0801: ASDLLKSSDE ATSKSEDENT ETSNAGLVSK SSSGVKEKSL VDSNVPKVTM SRGKKKKKDL YKKADAAGAT SDLYMAYKGP EKKDELSQSI ETIELTSKDD
0901: SMPPSANVHQ EDLRSTKKVG EVKAEPDDWE DAADVSTPKL EIAPEHRKVD GEDGDGVTTK KYSRDFLLKF AEQCIDIPEG FNVAPDVADI LINFNASAMR
1001: EPFPSPGRGT DRPSSGHRER RGSGVGDGDK WNKMPGPPMP GRDFQPDIGF GGNGVGFRPG PGGNSGVLRH PRGAMPIQYA MGQYAVGQYA MGQLATGGIL
1101: SGPMQSMGPP QGGGLRNGVD ADRWQRGTAF QKGLMPSPHT PAQNMHKAEV KYEVGKVTDE EQAKQRQLKA ILNKLTPQNF DKLFQQVKEV NIDNYVTLKG
1201: VISQIFDKAL MEPTFCEMYA NFCQHLAAEL PDLSVDNEKI TFKRLLLNKC QEEFERGERE ELEANVTNEE GEVKLSAEER EEKRVKARRR MLGNIRLIGE
1301: LYKKKMLTER IMHECIKKLL GDYQNPDEEN VEALCKLMST IGEMIDHAKA KEHMDAYFDM LEKLSNNMKL SSRVRFMLKD SIDLRKNKWQ QRRKVEGPKK
1401: IEEVHRDAAQ ERHAQATRLA RTPSLGGSSR RGQPMDFVPR GGGMLSSPGS QMGGFRPMSP QVRGYGMQDV RVDERHSFEN RTLSLPLTQR PLGDDPITLG
1501: PQGGLAKGMS SRGQPAGPSI DNMSSFGDSR RMVHAQSGYG SLSERPLYGL REELAPKYMP ERLSSQHDQS SAPERNVTYG NKERGFDTSR PPSPLVRSGG
1601: ATSTQNVAPD RIWPEERLLE MSMAAIKEFY SAKDEKEVAL CVKDLNSPGF YPSMISLWVT DSFERKDMER DLLAKLIIGL TLSRDVAISQ DQLIKGFENV
1701: LTSLEDAVND APRAAEFLGR IFGKVISENV IPFNEIGSLI YKGGEEEGRL VEIGLAAEVL GSTLEMIKVE QGDSAVSEIC RSSTMRLENF RPQGSKKQWK
1801: LDKFI
0001: MSYNQSRPDR SETQYRRTGR STGNQQQQQQ HRSSSAAGYG KGAGAPGSAP APSTYPDNSS LSSNRSFKKP GNAQGGGQPR VNLPPVNHPN NHNNGPNAHS
0101: RSQVTGEPGV GGPTNPTESF NRNTGPIPKA PTSQSTVMSS KINETPNTAK VAASGDASQA FPLQFGSLGP DLMVPARTTS APPNMDDQKR AQMQQSSLRT
0201: ASNVPASVPK KDSSNKGADN QLMRKEGHNP SSEKADIQVP HIAPPSQTQK SPITNIRMPS VQTPYQHTQV PHPVHFGGPN MHMQTPVTAT SFQMPMPMAL
0301: SMGNTPQIPP QVFYQGHPPH PMHHQGMMHQ AQGHGFATPM GAQIHPQLGH VGVGLSPQYP QQQGGKYGGA RKTTPVKITH PDTHEELRLD RRGDPYSEGD
0401: STALKPHSNP PPRSQPVSSF APRPVNLVQP SYNSNTMIYP PVSVPLNNGP MSSAQAPRYH YPVIDGSQRV QLINQPAHTA PQLIRPAAPA HLSSDSTSSV
0501: KARNAQNVMS SALPVNAKVS VKPAGVSEKL GSPKDRSHGE VNISLSQKNV EACSLSSSQQ PKPSFVSGVP NSSAPPAKSP VETVPLAKSS VETVPPVKSS
0601: VETAPVTTTE IRRAEMVSES ISVEDQTCKV EPPHNLTENR GQTMPDSLVS DPETATVAAK ENLSLPATNG FRKQLLKVST TSDAPTSDSV DTSIDKSTEG
0701: SSHASSEISG SSPQEKDLKC DNRTASDKLD ERSVISDAKH ETLSGVLEKA QNEVDGATDV CPVSEKLAVT DDTSSDLPHS THVLSSTVPL GHSETHKSAV
0801: ETNTRRNTST KGKKKIKEIL QKADAAGTTS DLYMAYKGPE EKKESSNVVH DVSNQNLLPA IPQAVEAIVD TEPVKNEPED WEDAADVSTP KLETADNSVN
0901: AKRGSSDEVS DNCINTEKKY SRDFLLKFAD LCTALPEGFD VSPDIANALI VAYMGASHHE HDSYPTPGKV MDRQASGARL DRRPSNVAGD DRWTKNQGSL
1001: PAGYGGNVGF RPGQGGNSGV LRNPRMQGPI ISRPMQPVGP MGGMGRNTPD LERWQRGSNF QQKGLFPSPH TPMQVMHKAE RKYQVGTIAD EEQAKQRQLK
1101: SILNKLTPQN FEKLFEQVKS VNIDNAVTLS GVISQIFDKA LMEPTFCEMY ADFCFHLSGA LPDFNENGEK ITFKRLLLNK CQEEFERGEK EEEEASRVAE
1201: EGQVEQTEEE REEKRLQVRR RMLGNIRLIG ELYKKRMLTE KIMHACIQKL LGYNQDPHEE NIEALCKLMS TIGVMIDHNK AKFQMDGYFE KMKMLSCKQE
1301: LSSRVRFMLI NAIDLRKNKW QERMKVEGPK KIEEVHRDAA QERQTQANRL SRGPSMNSSG RRGHMEFSSP RGGGGMLSPP AAQMGSYHGP PQGRGFSNQD
1401: IRFDDRPSYE PRMVPMPQRS VCEEPITLGP QGGLGQGMSI RRPAVASNTY QSDATQAGGG DSRRPAGGLN GFGSHRPASP VTHGRSSPQE RGTAYVHREF
1501: ASLSRASDLS PEVSSARQVL QGPSATVNSP RENALSEEQL ENLSLSAIKE YYSARDENEI GMCMKDMNSP AYHPTMISLW VTDSFERKDK ERDLLAKLLV
1601: NLVKSADNAL NEVQLVKGFE SVLKTLEDAV NDAPKAAEFL GRIFGKSVTE KVVTLTEIGR LIQEGGEEPG SLIEFGLGGD VLGSVLEMIK TEAGEETLVE
1701: IRRSSGLRIE NFKPHAPNRS KILEKFT
0101: RSQVTGEPGV GGPTNPTESF NRNTGPIPKA PTSQSTVMSS KINETPNTAK VAASGDASQA FPLQFGSLGP DLMVPARTTS APPNMDDQKR AQMQQSSLRT
0201: ASNVPASVPK KDSSNKGADN QLMRKEGHNP SSEKADIQVP HIAPPSQTQK SPITNIRMPS VQTPYQHTQV PHPVHFGGPN MHMQTPVTAT SFQMPMPMAL
0301: SMGNTPQIPP QVFYQGHPPH PMHHQGMMHQ AQGHGFATPM GAQIHPQLGH VGVGLSPQYP QQQGGKYGGA RKTTPVKITH PDTHEELRLD RRGDPYSEGD
0401: STALKPHSNP PPRSQPVSSF APRPVNLVQP SYNSNTMIYP PVSVPLNNGP MSSAQAPRYH YPVIDGSQRV QLINQPAHTA PQLIRPAAPA HLSSDSTSSV
0501: KARNAQNVMS SALPVNAKVS VKPAGVSEKL GSPKDRSHGE VNISLSQKNV EACSLSSSQQ PKPSFVSGVP NSSAPPAKSP VETVPLAKSS VETVPPVKSS
0601: VETAPVTTTE IRRAEMVSES ISVEDQTCKV EPPHNLTENR GQTMPDSLVS DPETATVAAK ENLSLPATNG FRKQLLKVST TSDAPTSDSV DTSIDKSTEG
0701: SSHASSEISG SSPQEKDLKC DNRTASDKLD ERSVISDAKH ETLSGVLEKA QNEVDGATDV CPVSEKLAVT DDTSSDLPHS THVLSSTVPL GHSETHKSAV
0801: ETNTRRNTST KGKKKIKEIL QKADAAGTTS DLYMAYKGPE EKKESSNVVH DVSNQNLLPA IPQAVEAIVD TEPVKNEPED WEDAADVSTP KLETADNSVN
0901: AKRGSSDEVS DNCINTEKKY SRDFLLKFAD LCTALPEGFD VSPDIANALI VAYMGASHHE HDSYPTPGKV MDRQASGARL DRRPSNVAGD DRWTKNQGSL
1001: PAGYGGNVGF RPGQGGNSGV LRNPRMQGPI ISRPMQPVGP MGGMGRNTPD LERWQRGSNF QQKGLFPSPH TPMQVMHKAE RKYQVGTIAD EEQAKQRQLK
1101: SILNKLTPQN FEKLFEQVKS VNIDNAVTLS GVISQIFDKA LMEPTFCEMY ADFCFHLSGA LPDFNENGEK ITFKRLLLNK CQEEFERGEK EEEEASRVAE
1201: EGQVEQTEEE REEKRLQVRR RMLGNIRLIG ELYKKRMLTE KIMHACIQKL LGYNQDPHEE NIEALCKLMS TIGVMIDHNK AKFQMDGYFE KMKMLSCKQE
1301: LSSRVRFMLI NAIDLRKNKW QERMKVEGPK KIEEVHRDAA QERQTQANRL SRGPSMNSSG RRGHMEFSSP RGGGGMLSPP AAQMGSYHGP PQGRGFSNQD
1401: IRFDDRPSYE PRMVPMPQRS VCEEPITLGP QGGLGQGMSI RRPAVASNTY QSDATQAGGG DSRRPAGGLN GFGSHRPASP VTHGRSSPQE RGTAYVHREF
1501: ASLSRASDLS PEVSSARQVL QGPSATVNSP RENALSEEQL ENLSLSAIKE YYSARDENEI GMCMKDMNSP AYHPTMISLW VTDSFERKDK ERDLLAKLLV
1601: NLVKSADNAL NEVQLVKGFE SVLKTLEDAV NDAPKAAEFL GRIFGKSVTE KVVTLTEIGR LIQEGGEEPG SLIEFGLGGD VLGSVLEMIK TEAGEETLVE
1701: IRRSSGLRIE NFKPHAPNRS KILEKFT
Arabidopsis Description
EIF4GEukaryotic translation initiation factor 4G [Source:UniProtKB/Swiss-Prot;Acc:Q76E23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.