CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRG97402
KRG97711
KRH14933
KRH31163
KRH31506
KRH33614
KRH52210
KRH61534
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	KRG97402	AT1G27360.1	21798944
AT2G24050.1	KRH31506	AT1G27360.1	21798944
AT2G24050.1	KRG97711	AT3G08530.1	21798944
AT2G24050.1	KRH14933	AT3G08530.1	21798944
AT2G24050.1	KRH31163	AT3G08530.1	21798944
AT2G24050.1	KRH73205	AT3G08530.1	21798944
AT2G24050.1	KRG90357	AT5G35620.1	21798944
AT2G24050.1	KRH33614	AT5G35620.1	21798944
AT5G57870.1	KRH52210	AT1G72730.1	21798944
AT5G57870.1	KRH61534	AT1G72730.1	21798944
AT5G57870.1	KRG97711	AT3G08530.1	21798944
AT5G57870.1	KRH14933	AT3G08530.1	21798944
AT5G57870.1	KRH31163	AT3G08530.1	21798944
AT5G57870.1	KRH73205	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55033	Soybean	endoplasmic reticulum	92.89	92.77
KRH03030	Soybean	endoplasmic reticulum	72.74	71.36
KRH72326	Soybean	endoplasmic reticulum	71.83	70.92
GSMUA_Achr4P06000_001	Banana	cytosol	3.75	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	71.96	70.15
Solyc07g005810.2.1	Tomato	plastid	68.73	68.82
PGSC0003DMT400029102	Potato	cytosol, plastid	68.35	67.82
PGSC0003DMT400020464	Potato	cytosol	65.63	65.72
Solyc12g009960.1.1	Tomato	nucleus	65.5	65.59
CDY69274	Canola	cytosol, mitochondrion	27.26	64.53
AT5G57870.1	Thale cress	plastid	62.27	61.79
Bra020407.1-P	Field mustard	plastid	60.59	60.91
CDY32742	Canola	plastid	60.59	60.91
CDY28211	Canola	mitochondrion	36.95	60.59
CDY28203	Canola	cytosol	39.92	60.47
CDY02774	Canola	plastid	60.21	60.36
Bra011218.1-P	Field mustard	plastid	42.64	60.33
GSMUA_Achr4P05990_001	Banana	cytosol	11.37	59.86
GSMUA_Achr9P22750_001	Banana	plastid	57.49	59.81
CDY39236	Canola	cytosol	56.98	59.68
Bra024051.1-P	Field mustard	cytosol	57.11	59.09
Bra011211.1-P	Field mustard	plastid	56.98	58.88
GSMUA_AchrUn_...	Banana	cytosol	56.59	58.71
CDX68687	Canola	plastid	56.2	58.16
EES12452	Sorghum	cytosol	59.3	58.03
CDX72262	Canola	cytosol	55.68	57.77
Zm00001d003147_P001	Maize	plastid	58.4	57.51
HORVU2Hr1G086240.1	Barley	cytosol	55.56	57.1
Zm00001d025777_P007	Maize	plastid	57.75	56.94
Os02t0611500-01	Rice	cytosol	56.46	56.03
TraesCS2A01G354900.1	Wheat	cytosol	57.11	55.95
Os04t0499300-01	Rice	plastid	58.14	55.83
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	56.72	55.71
AT2G24050.1	Thale cress	plastid	53.75	55.69
TraesCS2B01G373600.1	Wheat	cytosol	56.59	55.51
AT4G30680.1	Thale cress	mitochondrion, plastid	17.18	50.57
GSMUA_Achr3P28040_001	Banana	cytosol	27.65	47.45
Solyc07g005780.1.1	Tomato	cytosol	27.39	47.11
AT1G62410.1	Thale cress	cytosol	13.57	47.09
GSMUA_Achr4P05970_001	Banana	cytosol	8.66	44.37
GSMUA_Achr4P12750_001	Banana	cytosol	62.4	41.64
HORVU6Hr1G023180.1	Barley	cytosol	14.47	37.97
Os06t0520600-01	Rice	extracellular	20.93	22.78
KRH66436	Soybean	endoplasmic reticulum	24.42	11.33
KRH48862	Soybean	nucleus	24.42	11.29
KRH75579	Soybean	endoplasmic reticulum	24.81	10.54
KRH46542	Soybean	nucleus	24.42	10.29

Protein Annotations

Gene3D:1.25.40.180	EntrezGene:100800438	MapMan:17.4.2.4.2	EMBL:ACUP02002601	InterPro:ARM-type_fold	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G154100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
UniProt:I1JWB5	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	EnsemblPlants:KRH63081	ProteinID:KRH63081
ProteinID:KRH63081.1	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366
PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI000233A074
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:35268695..35276023

Molecular Weight (calculated)

85205.2 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.429

Length

774 amino acids

Sequence
(BLAST)

001: MQQGDPTVLS LRPGGGRGGG SRLFGHSSSS LSADLPLCRP HAYFSLKTRD SRFEGHERVR YSRDQLLQLQ EAVEVPDDIL KIKQDIEAEI FGENPSWGRA
101: ESNLPHQLQN RYSEPDNRDW RGHSGQLPAN SDERSWENLR DNREFGNRQQ DASQVNRHDQ LNSQFARTQI SSMQGGGPTP TLVKAEVPWS ARRGSLSEKD
201: RVIKTVKGIL NKLTPEKFDI LKGQLIDSGI TSADILKDVI SLIFDKAVLE PTFCPMYAQL CSDLNEKLPP FPSEDPGGKE ITFKRVLLNN CQEAFEGAEN
301: LREELKRMTA PEQEMERMDK ERLLKLRTLG NIRLIGELLK QKMVPEKIVH HIVQELLGSP DSMFCPVEEN VEAICQFFNT IGKQLDESLK SRRINDVYFS
401: RLKELSSNLQ LVPRLRFMIR DVIELRASNW VPRREEVKAK TITEIHSEAE KNLGLRPGAT ASMRNPRGGV QGNASSGGFP IARPGAGGLM PGMPGTRKMP
501: GMPGFDNGNW EMPKTRSMPR GDLPGVQAAG QSNSALLSKS TTLNSKLLPQ GSGGIISGRN SALVHGGGTN FGLGPEAAPQ LSSPAKTATP VPVSSEKPQH
601: PAARLNTDNL RCRTVSLLEE YFSVQLLEEA LQCVEELKSP SYHPEVVKEA ISLALDKSPP CVEPVANLIE YLYIKKILTP IDIGTGCLLF GSLLDDIGID
701: LPKAPSNFGE IIGKLILAGG LDCKLVREIL KKVDDGMFQR AIFDSVVGAI RSASGQAVLD AQTSDIEACQ SMLK

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.