Factsheet for TraesCS2B01G373600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G182300.1
TraesCS4B01G136100.2
TraesCS4D01G130900.1
TraesCS5A01G153500.1
TraesCS5B01G152300.1
TraesCS5D01G158800.1
TraesCS6A01G110100.2
TraesCS6A01G155300.1
TraesCS6A01G186600.1
TraesCS6A01G186800.1
TraesCS6B01G138400.1
TraesCS6B01G183400.1
TraesCS6B01G217700.1
TraesCS6B01G217800.1
TraesCS6D01G098500.1
TraesCS6D01G145200.1
TraesCS6D01G173700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	TraesCS6A01G110100.2	AT1G27360.1	21798944
AT2G24050.1	TraesCS6A01G155300.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G138400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G183400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G098500.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G145200.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT2G24050.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5D01G158800.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS1A01G149200.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1B01G167100.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1D01G146500.1	AT5G35620.1	21798944
AT5G57870.1	TraesCS6A01G186600.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6A01G186800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217700.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6D01G173700.3	AT1G72730.1	21798944
AT5G57870.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT5G57870.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5D01G158800.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	98.86	98.98
TraesCS2A01G354900.1	Wheat	cytosol	98.48	98.35
HORVU2Hr1G086240.1	Barley	cytosol	92.14	96.55
EES12452	Sorghum	cytosol	79.09	78.89
Zm00001d003147_P001	Maize	plastid	77.57	77.86
Zm00001d025777_P007	Maize	plastid	76.93	77.32
Os04t0499300-01	Rice	plastid	76.05	74.44
GSMUA_Achr4P06000_001	Banana	cytosol	3.68	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	60.2	59.82
CDY69274	Canola	cytosol, mitochondrion	24.71	59.63
Solyc07g005810.2.1	Tomato	plastid	57.29	58.47
GSMUA_Achr9P22750_001	Banana	plastid	55.13	58.47
Solyc12g009960.1.1	Tomato	nucleus	56.91	58.09
PGSC0003DMT400020464	Potato	cytosol	56.65	57.83
PGSC0003DMT400029102	Potato	cytosol, plastid	56.91	57.56
KRH55033	Soybean	endoplasmic reticulum	56.27	57.29
KRH72326	Soybean	endoplasmic reticulum	56.91	57.27
GSMUA_AchrUn_...	Banana	cytosol	54.12	57.24
KRH03030	Soybean	endoplasmic reticulum	57.03	57.03
KRH63081	Soybean	endoplasmic reticulum	55.51	56.59
CDY39236	Canola	cytosol	52.98	56.56
GSMUA_Achr4P05990_001	Banana	cytosol	10.52	56.46
Bra024051.1-P	Field mustard	cytosol	53.23	56.15
AT5G57870.1	Thale cress	plastid	55.13	55.77
CDY28211	Canola	mitochondrion	33.33	55.72
CDY28203	Canola	cytosol	35.87	55.38
CDX72262	Canola	cytosol	51.84	54.83
CDY32742	Canola	plastid	52.98	54.29
Bra020407.1-P	Field mustard	plastid	52.85	54.16
Bra011211.1-P	Field mustard	plastid	51.33	54.07
CDX68687	Canola	plastid	51.2	54.01
AT2G24050.1	Thale cress	plastid	50.57	53.41
Bra011218.1-P	Field mustard	plastid	37.01	53.38
CDY02774	Canola	plastid	52.09	53.24
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.81	52.55
GSMUA_Achr3P28040_001	Banana	cytosol	28.01	49.0
GSMUA_Achr4P05970_001	Banana	cytosol	8.62	45.03
AT4G30680.1	Thale cress	mitochondrion, plastid	14.45	43.35
Solyc07g005780.1.1	Tomato	cytosol	24.08	42.22
AT1G62410.1	Thale cress	cytosol	11.41	40.36
GSMUA_Achr4P12750_001	Banana	cytosol	59.06	40.17
TraesCS2B01G408800.1	Wheat	nucleus	22.31	9.87
TraesCS2B01G235100.1	Wheat	golgi	23.32	9.81

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS2B01G373600	EnsemblPlants:TraesCS2B01G373600.1	SEG:seg

Description

No Description!

Coordinates

chr2B:-:532091050..532096596

Molecular Weight (calculated)

86564.5 Da

IEP (calculated)

8.147

GRAVY (calculated)

-0.487

Length

789 amino acids

Sequence
(BLAST)

001: MTTDQPVISL RPGGGGGGPR GGRLFAPAFA VAASGSGDFL RPHGGGASGV SRIGDLHSET RERVRYSRDQ LLDLRKITDV TEQILRLQQE IEAELHGDDQ
101: SWVRNDSNVQ LQTQAQPQVQ AQNRFTETDN RDWRARTEKP PAPAVQEEKS WDNIREVKEQ YNASGRQQEQ FNRQDQSSSQ KAQVGPPPAL IKADVPWSAR
201: RGNLSEKDRV LKTVKGILNK LTPEKFDLLK GQLLDSGITT ADILKDVISL IFEKAVFEPT FCPMYAQLCS ELNDNLPTFP SEEPGGKEIT FKRVLLNNCQ
301: EAFEGADSLR VEIASLTGPD QEMEKRDKER IFKLRTLGNI RLIGELLKQK MVPEKIVHHI VKELLGSDKK ACPDEEHVEA ICQFFNTIGK QLDENPKSRR
401: INDTYFVQIR ELVANPQLTP RSKFMVRDLI DLRSNNWVPR RAEIKAKTIS EIHTEAEKNL GLRPGATANM RNGRNAPGGP LSPGGFSVNR PGTGGMMPGM
501: PGSRKMPGMP GLDNDNWEVQ RSRSMPRGDP LRNNQGPLIN KVSSINKPSP INPRLLPQGT GALIGKSALL GTGGPPSRPS SLAASPTPLP AQTTASPKPS
601: SATPASVPIP DKAASSAKVI PAGLQKKTAS LLEEYFGIRI LDEAQQCIEE LQRPDYHPEI VKEAINLALD KGASFVDPLV KLLEHLYTKK TFKTEDLENG
701: CLLYGSLLED IGIDLPKAPT QFGEVVARLI LSCGLRFEAV EGILKAMEDT FFRKAIFTAV TKTLEADPAG QAILSSHAAV VDACNSLSI

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.