Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G354900.1 | |
| TraesCS2B01G373600.1 | |
| TraesCS2D01G353600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | TraesCS2A01G354900.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2B01G373600.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2D01G353600.1 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G173700.3 | Wheat | cytosol | 96.78 | 91.74 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 95.84 | 91.46 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 37.76 | 87.45 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 42.46 | 84.53 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 18.68 | 60.41 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 5.81 | 60.16 |
| Solyc12g095990.1.1 | Tomato | nucleus | 19.23 | 59.32 |
| PGSC0003DMT400075339 | Potato | cytosol | 19.23 | 59.32 |
| TraesCS7A01G419400.1 | Wheat | cytosol | 19.23 | 59.18 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 19.07 | 58.84 |
| PGSC0003DMT400075336 | Potato | cytosol | 18.92 | 58.78 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 19.0 | 58.6 |
| Solyc07g040750.1.1 | Tomato | cytosol | 19.0 | 58.6 |
| PGSC0003DMT400021166 | Potato | cytosol | 19.0 | 58.6 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 18.92 | 58.35 |
| CDY39079 | Canola | cytosol | 18.76 | 58.01 |
| Bra021517.1-P | Field mustard | cytosol | 18.76 | 58.01 |
| Bra027387.1-P | Field mustard | cytosol | 18.68 | 57.77 |
| CDY08220 | Canola | cytosol | 18.6 | 57.52 |
| Bra014365.1-P | Field mustard | cytosol | 18.6 | 57.52 |
| AT1G54270.1 | Thale cress | cytosol | 18.52 | 57.28 |
| CDY10607 | Canola | cytosol | 18.45 | 57.18 |
| CDY02469 | Canola | cytosol | 18.45 | 57.04 |
| Bra030893.1-P | Field mustard | cytosol | 18.45 | 57.04 |
| Bra001530.1-P | Field mustard | cytosol | 18.6 | 56.97 |
| CDY32586 | Canola | cytosol | 16.88 | 56.88 |
| Bra029124.1-P | Field mustard | cytosol | 18.13 | 56.34 |
| TraesCS6A01G116200.1 | Wheat | endoplasmic reticulum, vacuole | 19.54 | 56.33 |
| Os02t0221300-01 | Rice | cytosol | 38.78 | 56.07 |
| Bra037977.1-P | Field mustard | cytosol | 17.97 | 55.58 |
| AT1G72730.1 | Thale cress | cytosol | 18.05 | 55.56 |
| CDY67069 | Canola | cytosol | 4.4 | 55.45 |
| CDY24057 | Canola | cytosol | 17.9 | 55.34 |
| CDY33073 | Canola | cytosol | 17.74 | 54.85 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.37 | 54.8 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.37 | 54.8 |
| CDY72259 | Canola | cytosol | 9.42 | 54.05 |
| AT3G13920.5 | Thale cress | cytosol | 17.66 | 53.7 |
| CDY55205 | Canola | cytosol | 17.82 | 53.66 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 3.53 | 53.57 |
| CDX97528 | Canola | cytosol | 17.66 | 52.94 |
| OQU84655 | Sorghum | cytosol | 31.48 | 52.42 |
| CDX82505 | Canola | cytosol | 17.58 | 52.34 |
| CDX75739 | Canola | cytosol | 17.66 | 51.61 |
| CDY11154 | Canola | cytosol | 7.77 | 49.01 |
| Zm00001d016351_P002 | Maize | nucleus | 32.42 | 46.3 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 13.27 | 45.8 |
| KXG29825 | Sorghum | cytosol | 31.48 | 45.46 |
| CDY54037 | Canola | cytosol | 8.87 | 42.32 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 13.66 | 42.13 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 10.05 | 41.69 |
| CDY53867 | Canola | cytosol | 13.5 | 40.76 |
| CDX72939 | Canola | mitochondrion, nucleus | 13.34 | 36.48 |
| Bra016037.1-P | Field mustard | cytosol | 19.23 | 33.7 |
| Zm00001d016350_P001 | Maize | vacuole | 13.27 | 33.53 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 10.2 | 29.82 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 10.13 | 29.72 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 10.52 | 25.62 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 10.05 | 25.55 |
| CDY68148 | Canola | nucleus | 14.6 | 25.17 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 10.05 | 24.38 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 9.11 | 22.83 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 8.08 | 21.55 |
| TraesCS6A01G234000.1 | Wheat | mitochondrion | 7.46 | 15.81 |
| CDY49860 | Canola | cytosol | 1.1 | 11.2 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4283 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF14111 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6A01G186800 |
| EnsemblPlants:TraesCS6A01G186800.1 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6A:+:222673333..222680766
Molecular Weight (calculated)
140826.0 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.470
Length
1274 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCNSRENKA APEQKLTTLS GKKKCFACKE TSHNLDQCRI KDKLGTAAQL FGHSTRFPFY MIQPSKEVVE NEKFYHHCLL ITSNACNLDP AAVKIELNKF
0101: WKLTDGWYIK REGRQNFVAS FNSEDDLLSC LNPPNVETFL DEKEVNFTVA RWVEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFVFGW SSRPVKFMIE DKARRIEGQW KEVEERKVSV MKEYADIREG IEVPPETLNK GMDLEGTGIV FAGNYSLDFG
0301: SCSCKECKEE LKTTERNGNI MKEYADIREE GIEVPAETLN EGMYLEGTGV DFTGSYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLKGTG VVFAGNYSLD FGSCPGKECK EELKTTERNG SVMKEYADIR EEGIEVPLET LNKGMDLEGT GVDSAGNYSL DFGSCLGKEC KEEPKTTETV
0501: TLLEVAKFIP ELRADEEIEE NSGSAMAATT TNSKKAAEGG QSPSESSARG DHMSGLEDCS DKKHQKKLMT CDMATFLQVS KFTEEFKTDG EIKENNASAI
0601: VGTRTNSEGA TVDIPKATED MATLLQASKF TEELRTDREI KENNASAILG TRTNYERATE DIPKATEDMA TLLQVSKFTE ELRTNGEIKE NNASAIVDTR
0701: TNSERATEDV PKTEGGQSIS GSSTSTSLIE EVFRGHKPSI KNVYRRRDRK QKKSTEGSTL CANISSDSAH EGLQKPPIKN MYEGSDPKQK GSTGGQVASK
0801: ELNKGMNPGS SSHATRIATS TCNMMDSESL LEKEHEKEMK MAETAAKTVG AEGAQSIKGS SVCMLRVTQT KEGAWFDGKQ PVSKMTTRLT QFYEEFNTYN
0901: EIYDSFVEMG LQENLLKGIY AYGLEKPSLV HQRGIVPLCK GLDVIQQSLS GTTVTLACGV LQRLDYGSTE CQALVLVPTR DLAQETEKVI GALGQWLGVK
1001: AHACLGGTSV REHKQILSSS TQVIVATPSR ALDMLRTRVL CPDNVRMFVL DEADEILAGG LKNQIYDIIK LLPAKIQFAV FSTTMSNEAL ELCRKCMNKP
1101: MKVIVPKDEE LEGFSVKQFH VKAEDEELKF EKLCDLFDTM AVTQNVIFVN ARRKVESLAE KISGRGYTVS ASHGGMDQHA RDVAVQDLRS GSSRVLVTTD
1201: LRGADALQVP VVINYDLPTQ PVQYLRHVRR SGQPGGIGVA ISFVARADER VLSDIQRFCN TQLAELPSDV ADLL
0101: WKLTDGWYIK REGRQNFVAS FNSEDDLLSC LNPPNVETFL DEKEVNFTVA RWVEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFVFGW SSRPVKFMIE DKARRIEGQW KEVEERKVSV MKEYADIREG IEVPPETLNK GMDLEGTGIV FAGNYSLDFG
0301: SCSCKECKEE LKTTERNGNI MKEYADIREE GIEVPAETLN EGMYLEGTGV DFTGSYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLKGTG VVFAGNYSLD FGSCPGKECK EELKTTERNG SVMKEYADIR EEGIEVPLET LNKGMDLEGT GVDSAGNYSL DFGSCLGKEC KEEPKTTETV
0501: TLLEVAKFIP ELRADEEIEE NSGSAMAATT TNSKKAAEGG QSPSESSARG DHMSGLEDCS DKKHQKKLMT CDMATFLQVS KFTEEFKTDG EIKENNASAI
0601: VGTRTNSEGA TVDIPKATED MATLLQASKF TEELRTDREI KENNASAILG TRTNYERATE DIPKATEDMA TLLQVSKFTE ELRTNGEIKE NNASAIVDTR
0701: TNSERATEDV PKTEGGQSIS GSSTSTSLIE EVFRGHKPSI KNVYRRRDRK QKKSTEGSTL CANISSDSAH EGLQKPPIKN MYEGSDPKQK GSTGGQVASK
0801: ELNKGMNPGS SSHATRIATS TCNMMDSESL LEKEHEKEMK MAETAAKTVG AEGAQSIKGS SVCMLRVTQT KEGAWFDGKQ PVSKMTTRLT QFYEEFNTYN
0901: EIYDSFVEMG LQENLLKGIY AYGLEKPSLV HQRGIVPLCK GLDVIQQSLS GTTVTLACGV LQRLDYGSTE CQALVLVPTR DLAQETEKVI GALGQWLGVK
1001: AHACLGGTSV REHKQILSSS TQVIVATPSR ALDMLRTRVL CPDNVRMFVL DEADEILAGG LKNQIYDIIK LLPAKIQFAV FSTTMSNEAL ELCRKCMNKP
1101: MKVIVPKDEE LEGFSVKQFH VKAEDEELKF EKLCDLFDTM AVTQNVIFVN ARRKVESLAE KISGRGYTVS ASHGGMDQHA RDVAVQDLRS GSSRVLVTTD
1201: LRGADALQVP VVINYDLPTQ PVQYLRHVRR SGQPGGIGVA ISFVARADER VLSDIQRFCN TQLAELPSDV ADLL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.