Factsheet for TraesCS4A01G340500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G532700.1	Wheat	cytosol	97.49	97.69
TraesCSU01G076700.1	Wheat	cytosol	97.49	97.69
TraesCS5B01G534600.1	Wheat	cytosol	95.4	94.61
TraesCS4A01G031800.1	Wheat	cytosol	84.1	79.13
EER95473	Sorghum	cytosol	81.59	78.16
Zm00001d027728_P001	Maize	extracellular, plasma membrane	81.8	77.58
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	79.92	75.64
GSMUA_Achr10P...	Banana	nucleus	65.9	65.35
VIT_00s2262g00010.t01	Wine grape	cytosol	32.43	63.52
GSMUA_Achr6P14220_001	Banana	cytosol	65.69	60.04
KRG99590	Soybean	endoplasmic reticulum, nucleus	59.2	57.99
Solyc04g082790.2.1	Tomato	plastid	59.83	57.31
Solyc10g085790.1.1	Tomato	nucleus	59.83	56.3
KRG93607	Soybean	nucleus	58.16	56.16
PGSC0003DMT400022137	Potato	nucleus	60.04	55.84
CDX67556	Canola	cytosol	54.18	54.87
CDX95397	Canola	cytosol	56.28	54.45
CDX76225	Canola	cytosol	56.49	54.44
Bra040687.1-P	Field mustard	cytosol	56.49	54.44
CDY13319	Canola	cytosol	55.65	54.29
Bra028547.1-P	Field mustard	cytosol	55.65	54.18
VIT_08s0007g04400.t01	Wine grape	cytosol	57.53	53.61
AT3G53110.1	Thale cress	cytosol	55.44	53.43
VIT_08s0007g04430.t01	Wine grape	cytosol	33.05	50.8
TraesCS2A01G552800.1	Wheat	cytosol	25.52	33.06
TraesCS7A01G419400.1	Wheat	cytosol	27.41	31.64
TraesCS6A01G416700.1	Wheat	nucleus	26.78	30.99
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	27.62	29.86
TraesCS1A01G443400.1	Wheat	cytosol	24.9	27.42
TraesCS3A01G200100.1	Wheat	cytosol	24.48	26.83
TraesCS2A01G370200.2	Wheat	cytosol	25.31	24.15
TraesCS1A01G174600.1	Wheat	cytosol	26.15	23.81
TraesCS6A01G236800.1	Wheat	cytosol	25.1	22.94
TraesCS6A01G186600.1	Wheat	cytosol	20.5	17.82
TraesCS6A01G234000.1	Wheat	mitochondrion	21.34	16.97
TraesCS6A01G186800.1	Wheat	cytosol	21.55	8.08

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4A01G340500	EnsemblPlants:TraesCS4A01G340500.1	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:621564032..621567500

Molecular Weight (calculated)

53491.4 Da

IEP (calculated)

5.292

GRAVY (calculated)

-0.288

Length

478 amino acids

Sequence
(BLAST)

001: MAELEKKSPA DVDDPKAIET AVNENQKKLE ALSLLAPEDG GVGGGGPPLL DDYDDDSQIQ AVASSGTVYE SATTFEDLKL TPELLKGLHD EMGFSRPSKI
101: QAVTLPMILT PPYQNLVAQA HNGSGKTTCF VLGMLSRVDP SRRIPQAICI CPTRELAQQN KSVLMRMSKF TGITCASAIS PALKDYMPIS KMAPVTDQVV
201: IGTSGTLIKW ITNKKLATRD IKILVFDEAD HMLAEENFMS DSKRIMRDIQ SSAGDCQLLL FSATFNEKVK DFITKVIKEG NQIFVKKEDL TLDKVKQYKV
301: RVPDEIAKIE VIRDKIFEFG QKVGQVIIFV RTKISTMHLH NALTKEDYVC SSIQGSLDHS EREKVIQEFK DGYTKVLIST DLLARGFDQS QVNLVINYDM
401: PIKYNSRDEP DYEVYLHRIG RAGRFGRKGA VFNLLCGETD DILMTKIENY FQHKVQEVPS WESEENFETV LKDAGLLE

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.